Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC18.82■□□□□ 0.6
HNF4AP41235 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC18.82■□□□□ 0.6
HNF4AP41235 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HNF4AP41235 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
HNF4AP41235 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
HNF4AP41235 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HNF4AP41235 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HNF4AP41235 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
HNF4AP41235 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
HNF4AP41235 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HNF4AP41235 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC18.82■□□□□ 0.6
HNF4AP41235 Z82202.1-201ENST00000623446 1880 ntBASIC18.82■□□□□ 0.6
HNF4AP41235 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
HNF4AP41235 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
HNF4AP41235 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
HNF4AP41235 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC18.81■□□□□ 0.6
HNF4AP41235 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
HNF4AP41235 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC18.81■□□□□ 0.6
HNF4AP41235 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
HNF4AP41235 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC18.81■□□□□ 0.6
HNF4AP41235 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HNF4AP41235 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
HNF4AP41235 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HNF4AP41235 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
HNF4AP41235 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HNF4AP41235 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
HNF4AP41235 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
HNF4AP41235 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC18.81■□□□□ 0.6
HNF4AP41235 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC18.81■□□□□ 0.6
HNF4AP41235 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC18.81■□□□□ 0.6
HNF4AP41235 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC18.81■□□□□ 0.6
HNF4AP41235 ADM-205ENST00000528544 586 ntTSL 2 BASIC18.81■□□□□ 0.6
HNF4AP41235 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC18.81■□□□□ 0.6
HNF4AP41235 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HNF4AP41235 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC18.81■□□□□ 0.6
HNF4AP41235 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC18.81■□□□□ 0.6
HNF4AP41235 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HNF4AP41235 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
HNF4AP41235 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HNF4AP41235 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
HNF4AP41235 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HNF4AP41235 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HNF4AP41235 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HNF4AP41235 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
HNF4AP41235 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC18.8■□□□□ 0.6
HNF4AP41235 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HNF4AP41235 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
HNF4AP41235 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC18.8■□□□□ 0.6
HNF4AP41235 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HNF4AP41235 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HNF4AP41235 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
HNF4AP41235 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
HNF4AP41235 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HNF4AP41235 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HNF4AP41235 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC18.8■□□□□ 0.6
HNF4AP41235 NME1-207ENST00000480143 964 ntTSL 2 BASIC18.8■□□□□ 0.6
HNF4AP41235 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
HNF4AP41235 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC18.8■□□□□ 0.6
HNF4AP41235 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
HNF4AP41235 AC069544.1-201ENST00000609399 999 ntBASIC18.8■□□□□ 0.6
HNF4AP41235 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC18.8■□□□□ 0.6
HNF4AP41235 AC073648.6-201ENST00000641589 218 ntBASIC18.8■□□□□ 0.6
HNF4AP41235 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC18.8■□□□□ 0.6
HNF4AP41235 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
HNF4AP41235 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HNF4AP41235 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
HNF4AP41235 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC18.8■□□□□ 0.6
HNF4AP41235 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC18.79■□□□□ 0.6
HNF4AP41235 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC18.79■□□□□ 0.6
HNF4AP41235 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HNF4AP41235 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HNF4AP41235 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC18.79■□□□□ 0.6
HNF4AP41235 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
HNF4AP41235 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
HNF4AP41235 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HNF4AP41235 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC18.79■□□□□ 0.6
HNF4AP41235 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC18.79■□□□□ 0.6
HNF4AP41235 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC18.79■□□□□ 0.6
HNF4AP41235 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC18.79■□□□□ 0.6
HNF4AP41235 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC18.79■□□□□ 0.6
HNF4AP41235 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
HNF4AP41235 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HNF4AP41235 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HNF4AP41235 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC18.79■□□□□ 0.6
HNF4AP41235 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
HNF4AP41235 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC18.79■□□□□ 0.6
HNF4AP41235 AC128676.1-201ENST00000454392 318 ntBASIC18.79■□□□□ 0.6
HNF4AP41235 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
HNF4AP41235 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC18.79■□□□□ 0.6
HNF4AP41235 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC18.79■□□□□ 0.6
HNF4AP41235 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC18.79■□□□□ 0.6
HNF4AP41235 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HNF4AP41235 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
HNF4AP41235 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
HNF4AP41235 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HNF4AP41235 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
HNF4AP41235 AL020996.1-203ENST00000536896 2307 ntBASIC18.79■□□□□ 0.6
HNF4AP41235 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
HNF4AP41235 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HNF4AP41235 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC18.79■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms