Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 CCR12P-201ENST00000446203 998 ntBASIC18.99■□□□□ 0.63
HOXC4P09017 PRSS44-201ENST00000515154 1146 ntBASIC18.99■□□□□ 0.63
HOXC4P09017 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC18.99■□□□□ 0.63
HOXC4P09017 TK2-213ENST00000563369 882 ntTSL 5 BASIC18.99■□□□□ 0.63
HOXC4P09017 AC116562.4-202ENST00000641738 218 ntBASIC18.99■□□□□ 0.63
HOXC4P09017 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
HOXC4P09017 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
HOXC4P09017 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
HOXC4P09017 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
HOXC4P09017 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
HOXC4P09017 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
HOXC4P09017 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
HOXC4P09017 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC18.98■□□□□ 0.63
HOXC4P09017 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HOXC4P09017 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
HOXC4P09017 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC18.98■□□□□ 0.63
HOXC4P09017 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
HOXC4P09017 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HOXC4P09017 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
HOXC4P09017 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
HOXC4P09017 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC18.98■□□□□ 0.63
HOXC4P09017 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HOXC4P09017 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
HOXC4P09017 SLC25A3P1-201ENST00000443844 931 ntBASIC18.98■□□□□ 0.63
HOXC4P09017 KRT18P21-201ENST00000515767 1272 ntBASIC18.98■□□□□ 0.63
HOXC4P09017 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
HOXC4P09017 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC18.98■□□□□ 0.63
HOXC4P09017 AL023803.3-201ENST00000615559 522 ntBASIC18.98■□□□□ 0.63
HOXC4P09017 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC18.98■□□□□ 0.63
HOXC4P09017 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HOXC4P09017 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HOXC4P09017 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC18.98■□□□□ 0.63
HOXC4P09017 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
HOXC4P09017 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC18.98■□□□□ 0.63
HOXC4P09017 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
HOXC4P09017 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC18.98■□□□□ 0.63
HOXC4P09017 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC18.98■□□□□ 0.63
HOXC4P09017 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC18.98■□□□□ 0.63
HOXC4P09017 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC18.98■□□□□ 0.63
HOXC4P09017 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC18.97■□□□□ 0.63
HOXC4P09017 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
HOXC4P09017 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
HOXC4P09017 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
HOXC4P09017 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HOXC4P09017 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HOXC4P09017 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
HOXC4P09017 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC18.97■□□□□ 0.63
HOXC4P09017 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HOXC4P09017 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
HOXC4P09017 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC18.97■□□□□ 0.63
HOXC4P09017 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC18.97■□□□□ 0.63
HOXC4P09017 TSPY17P-201ENST00000450329 467 ntBASIC18.97■□□□□ 0.63
HOXC4P09017 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
HOXC4P09017 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
HOXC4P09017 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC18.97■□□□□ 0.63
HOXC4P09017 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC18.97■□□□□ 0.63
HOXC4P09017 AC010653.2-201ENST00000623505 997 ntBASIC18.97■□□□□ 0.63
HOXC4P09017 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HOXC4P09017 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC18.97■□□□□ 0.63
HOXC4P09017 AC073508.3-201ENST00000619697 1419 ntBASIC18.97■□□□□ 0.63
HOXC4P09017 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
HOXC4P09017 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HOXC4P09017 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
HOXC4P09017 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC18.97■□□□□ 0.63
HOXC4P09017 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC18.96■□□□□ 0.63
HOXC4P09017 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
HOXC4P09017 MED17-221ENST00000639724 2317 ntTSL 5 BASIC18.96■□□□□ 0.63
HOXC4P09017 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
HOXC4P09017 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC18.96■□□□□ 0.63
HOXC4P09017 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC18.96■□□□□ 0.63
HOXC4P09017 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
HOXC4P09017 AC005521.1-201ENST00000393351 872 ntBASIC18.96■□□□□ 0.63
HOXC4P09017 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC18.96■□□□□ 0.63
HOXC4P09017 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC18.96■□□□□ 0.63
HOXC4P09017 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC18.96■□□□□ 0.63
HOXC4P09017 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC18.96■□□□□ 0.63
HOXC4P09017 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
HOXC4P09017 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC18.96■□□□□ 0.63
HOXC4P09017 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC18.96■□□□□ 0.63
HOXC4P09017 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC18.96■□□□□ 0.63
HOXC4P09017 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
HOXC4P09017 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
HOXC4P09017 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC18.95■□□□□ 0.62
HOXC4P09017 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC18.95■□□□□ 0.62
HOXC4P09017 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
HOXC4P09017 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC18.95■□□□□ 0.62
HOXC4P09017 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
HOXC4P09017 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HOXC4P09017 HIST1H2APS4-201ENST00000362070 348 ntBASIC18.95■□□□□ 0.62
HOXC4P09017 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
HOXC4P09017 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC18.95■□□□□ 0.62
HOXC4P09017 AL137013.1-201ENST00000432946 1228 ntBASIC18.95■□□□□ 0.62
HOXC4P09017 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
HOXC4P09017 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC18.95■□□□□ 0.62
HOXC4P09017 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC18.95■□□□□ 0.62
HOXC4P09017 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HOXC4P09017 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HOXC4P09017 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HOXC4P09017 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC18.95■□□□□ 0.62
HOXC4P09017 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 60.8 ms