Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
RNF40O75150 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC20.91■□□□□ 0.94
RNF40O75150 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC20.91■□□□□ 0.94
RNF40O75150 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC20.91■□□□□ 0.94
RNF40O75150 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
RNF40O75150 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
RNF40O75150 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
RNF40O75150 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
RNF40O75150 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
RNF40O75150 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
RNF40O75150 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC20.9■□□□□ 0.94
RNF40O75150 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
RNF40O75150 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
RNF40O75150 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
RNF40O75150 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
RNF40O75150 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC20.9■□□□□ 0.94
RNF40O75150 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
RNF40O75150 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
RNF40O75150 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
RNF40O75150 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC20.9■□□□□ 0.94
RNF40O75150 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
RNF40O75150 SNORA78-201ENST00000459373 127 ntBASIC20.9■□□□□ 0.94
RNF40O75150 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC20.9■□□□□ 0.94
RNF40O75150 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
RNF40O75150 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
RNF40O75150 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
RNF40O75150 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
RNF40O75150 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC20.9■□□□□ 0.94
RNF40O75150 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
RNF40O75150 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
RNF40O75150 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC20.9■□□□□ 0.94
RNF40O75150 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC20.9■□□□□ 0.94
RNF40O75150 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
RNF40O75150 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC20.89■□□□□ 0.94
RNF40O75150 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC20.89■□□□□ 0.94
RNF40O75150 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC20.89■□□□□ 0.94
RNF40O75150 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC20.89■□□□□ 0.94
RNF40O75150 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
RNF40O75150 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC20.89■□□□□ 0.93
RNF40O75150 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC20.89■□□□□ 0.93
RNF40O75150 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
RNF40O75150 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
RNF40O75150 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC20.89■□□□□ 0.93
RNF40O75150 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
RNF40O75150 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
RNF40O75150 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC20.89■□□□□ 0.93
RNF40O75150 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC20.89■□□□□ 0.93
RNF40O75150 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC20.89■□□□□ 0.93
RNF40O75150 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC20.89■□□□□ 0.93
RNF40O75150 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC20.89■□□□□ 0.93
RNF40O75150 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
RNF40O75150 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
RNF40O75150 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
RNF40O75150 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC20.89■□□□□ 0.93
RNF40O75150 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC20.89■□□□□ 0.93
RNF40O75150 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
RNF40O75150 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
RNF40O75150 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
RNF40O75150 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
RNF40O75150 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
RNF40O75150 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
RNF40O75150 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
RNF40O75150 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
RNF40O75150 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
RNF40O75150 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
RNF40O75150 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
RNF40O75150 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
RNF40O75150 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC20.88■□□□□ 0.93
RNF40O75150 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
RNF40O75150 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
RNF40O75150 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
RNF40O75150 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
RNF40O75150 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
RNF40O75150 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC20.88■□□□□ 0.93
RNF40O75150 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC20.88■□□□□ 0.93
RNF40O75150 KLF2-202ENST00000592003 564 ntTSL 3 BASIC20.88■□□□□ 0.93
RNF40O75150 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
RNF40O75150 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC20.88■□□□□ 0.93
RNF40O75150 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
RNF40O75150 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
RNF40O75150 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
RNF40O75150 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
RNF40O75150 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC20.87■□□□□ 0.93
RNF40O75150 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC20.87■□□□□ 0.93
RNF40O75150 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC20.87■□□□□ 0.93
RNF40O75150 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
RNF40O75150 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
RNF40O75150 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
RNF40O75150 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
RNF40O75150 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
RNF40O75150 C2orf69P4-201ENST00000565394 541 ntBASIC20.87■□□□□ 0.93
RNF40O75150 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
RNF40O75150 AC073912.3-201ENST00000624414 853 ntBASIC20.87■□□□□ 0.93
RNF40O75150 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC20.87■□□□□ 0.93
RNF40O75150 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
RNF40O75150 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
RNF40O75150 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
RNF40O75150 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
RNF40O75150 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
RNF40O75150 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms