Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LMX1BO60663 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
LMX1BO60663 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC17.06■□□□□ 0.32
LMX1BO60663 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC17.06■□□□□ 0.32
LMX1BO60663 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
LMX1BO60663 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LMX1BO60663 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
LMX1BO60663 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LMX1BO60663 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LMX1BO60663 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
LMX1BO60663 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LMX1BO60663 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
LMX1BO60663 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LMX1BO60663 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LMX1BO60663 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC17.06■□□□□ 0.32
LMX1BO60663 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LMX1BO60663 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LMX1BO60663 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
LMX1BO60663 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC17.06■□□□□ 0.32
LMX1BO60663 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
LMX1BO60663 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC17.06■□□□□ 0.32
LMX1BO60663 MIR4497-201ENST00000583208 89 ntBASIC17.06■□□□□ 0.32
LMX1BO60663 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC17.06■□□□□ 0.32
LMX1BO60663 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
LMX1BO60663 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LMX1BO60663 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LMX1BO60663 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
LMX1BO60663 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
LMX1BO60663 AC092368.3-202ENST00000574180 1591 ntBASIC17.06■□□□□ 0.32
LMX1BO60663 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LMX1BO60663 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
LMX1BO60663 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
LMX1BO60663 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
LMX1BO60663 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LMX1BO60663 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LMX1BO60663 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LMX1BO60663 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LMX1BO60663 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
LMX1BO60663 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
LMX1BO60663 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
LMX1BO60663 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LMX1BO60663 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LMX1BO60663 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
LMX1BO60663 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC17.05■□□□□ 0.32
LMX1BO60663 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LMX1BO60663 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LMX1BO60663 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC17.05■□□□□ 0.32
LMX1BO60663 AC023632.3-201ENST00000521633 145 ntBASIC17.05■□□□□ 0.32
LMX1BO60663 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC17.05■□□□□ 0.32
LMX1BO60663 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC17.05■□□□□ 0.32
LMX1BO60663 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC17.05■□□□□ 0.32
LMX1BO60663 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC17.05■□□□□ 0.32
LMX1BO60663 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
LMX1BO60663 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC17.05■□□□□ 0.32
LMX1BO60663 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
LMX1BO60663 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC17.05■□□□□ 0.32
LMX1BO60663 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC17.05■□□□□ 0.32
LMX1BO60663 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
LMX1BO60663 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LMX1BO60663 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LMX1BO60663 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
LMX1BO60663 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
LMX1BO60663 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
LMX1BO60663 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
LMX1BO60663 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
LMX1BO60663 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
LMX1BO60663 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
LMX1BO60663 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC17.04■□□□□ 0.32
LMX1BO60663 SERP1-205ENST00000487153 657 ntTSL 4 BASIC17.04■□□□□ 0.32
LMX1BO60663 HES2-205ENST00000487437 968 ntTSL 3 BASIC17.04■□□□□ 0.32
LMX1BO60663 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
LMX1BO60663 RN7SL471P-201ENST00000580476 299 ntBASIC17.04■□□□□ 0.32
LMX1BO60663 SPIB-206ENST00000596074 847 ntTSL 2 BASIC17.04■□□□□ 0.32
LMX1BO60663 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
LMX1BO60663 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC17.04■□□□□ 0.32
LMX1BO60663 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC17.04■□□□□ 0.32
LMX1BO60663 MOK-233ENST00000524214 1539 ntTSL 2 BASIC17.04■□□□□ 0.32
LMX1BO60663 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
LMX1BO60663 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
LMX1BO60663 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
LMX1BO60663 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC17.04■□□□□ 0.32
LMX1BO60663 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
LMX1BO60663 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
LMX1BO60663 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
LMX1BO60663 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC17.04■□□□□ 0.32
LMX1BO60663 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC17.04■□□□□ 0.32
LMX1BO60663 AC093503.3-201ENST00000624917 2352 ntBASIC17.03■□□□□ 0.32
LMX1BO60663 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC17.03■□□□□ 0.32
LMX1BO60663 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
LMX1BO60663 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC17.03■□□□□ 0.32
LMX1BO60663 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC17.03■□□□□ 0.32
LMX1BO60663 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LMX1BO60663 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
LMX1BO60663 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
LMX1BO60663 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
LMX1BO60663 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LMX1BO60663 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
LMX1BO60663 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
LMX1BO60663 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
LMX1BO60663 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms