Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
TRAV40A0A0B4J280 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC15.83■□□□□ 0.12
TRAV40A0A0B4J280 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC15.83■□□□□ 0.12
TRAV40A0A0B4J280 CRYGFP-201ENST00000418459 633 ntBASIC15.83■□□□□ 0.12
TRAV40A0A0B4J280 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC15.83■□□□□ 0.12
TRAV40A0A0B4J280 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC15.83■□□□□ 0.12
TRAV40A0A0B4J280 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC15.83■□□□□ 0.12
TRAV40A0A0B4J280 AC097488.1-201ENST00000507834 756 ntBASIC15.83■□□□□ 0.12
TRAV40A0A0B4J280 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
TRAV40A0A0B4J280 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC15.83■□□□□ 0.12
TRAV40A0A0B4J280 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC15.83■□□□□ 0.12
TRAV40A0A0B4J280 C2orf69P3-201ENST00000565542 1120 ntBASIC15.83■□□□□ 0.12
TRAV40A0A0B4J280 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC15.83■□□□□ 0.12
TRAV40A0A0B4J280 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC15.83■□□□□ 0.12
TRAV40A0A0B4J280 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC15.83■□□□□ 0.12
TRAV40A0A0B4J280 AC010947.1-201ENST00000623454 693 ntBASIC15.83■□□□□ 0.12
TRAV40A0A0B4J280 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
TRAV40A0A0B4J280 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
TRAV40A0A0B4J280 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC15.83■□□□□ 0.12
TRAV40A0A0B4J280 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
TRAV40A0A0B4J280 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC15.83■□□□□ 0.12
TRAV40A0A0B4J280 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC15.83■□□□□ 0.12
TRAV40A0A0B4J280 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
TRAV40A0A0B4J280 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
TRAV40A0A0B4J280 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
TRAV40A0A0B4J280 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC15.83■□□□□ 0.12
TRAV40A0A0B4J280 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
TRAV40A0A0B4J280 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
TRAV40A0A0B4J280 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC15.83■□□□□ 0.12
TRAV40A0A0B4J280 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
TRAV40A0A0B4J280 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
TRAV40A0A0B4J280 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC15.82■□□□□ 0.12
TRAV40A0A0B4J280 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
TRAV40A0A0B4J280 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
TRAV40A0A0B4J280 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
TRAV40A0A0B4J280 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
TRAV40A0A0B4J280 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
TRAV40A0A0B4J280 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
TRAV40A0A0B4J280 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
TRAV40A0A0B4J280 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
TRAV40A0A0B4J280 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
TRAV40A0A0B4J280 AC004951.3-201ENST00000418645 1148 ntBASIC15.82■□□□□ 0.12
TRAV40A0A0B4J280 TK2-213ENST00000563369 882 ntTSL 5 BASIC15.82■□□□□ 0.12
TRAV40A0A0B4J280 SLC25A1P4-201ENST00000567977 778 ntBASIC15.82■□□□□ 0.12
TRAV40A0A0B4J280 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC15.82■□□□□ 0.12
TRAV40A0A0B4J280 AP005242.2-201ENST00000580065 1175 ntBASIC15.82■□□□□ 0.12
TRAV40A0A0B4J280 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
TRAV40A0A0B4J280 CYGB-204ENST00000589342 815 ntTSL 3 BASIC15.82■□□□□ 0.12
TRAV40A0A0B4J280 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC15.82■□□□□ 0.12
TRAV40A0A0B4J280 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
TRAV40A0A0B4J280 KRT18P22-201ENST00000402024 1347 ntBASIC15.82■□□□□ 0.12
TRAV40A0A0B4J280 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC15.82■□□□□ 0.12
TRAV40A0A0B4J280 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
TRAV40A0A0B4J280 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
TRAV40A0A0B4J280 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
TRAV40A0A0B4J280 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC15.82■□□□□ 0.12
TRAV40A0A0B4J280 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
TRAV40A0A0B4J280 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
TRAV40A0A0B4J280 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
TRAV40A0A0B4J280 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
TRAV40A0A0B4J280 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
TRAV40A0A0B4J280 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC15.81■□□□□ 0.12
TRAV40A0A0B4J280 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC15.81■□□□□ 0.12
TRAV40A0A0B4J280 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
TRAV40A0A0B4J280 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
TRAV40A0A0B4J280 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
TRAV40A0A0B4J280 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
TRAV40A0A0B4J280 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
TRAV40A0A0B4J280 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
TRAV40A0A0B4J280 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
TRAV40A0A0B4J280 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
TRAV40A0A0B4J280 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
TRAV40A0A0B4J280 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
TRAV40A0A0B4J280 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC15.81■□□□□ 0.12
TRAV40A0A0B4J280 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
TRAV40A0A0B4J280 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
TRAV40A0A0B4J280 CRAT-202ENST00000393384 973 ntTSL 2 BASIC15.81■□□□□ 0.12
TRAV40A0A0B4J280 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC15.81■□□□□ 0.12
TRAV40A0A0B4J280 PTPA-216ENST00000432651 857 ntTSL 2 BASIC15.81■□□□□ 0.12
TRAV40A0A0B4J280 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC15.81■□□□□ 0.12
TRAV40A0A0B4J280 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC15.81■□□□□ 0.12
TRAV40A0A0B4J280 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC15.81■□□□□ 0.12
TRAV40A0A0B4J280 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC15.81■□□□□ 0.12
TRAV40A0A0B4J280 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
TRAV40A0A0B4J280 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
TRAV40A0A0B4J280 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
TRAV40A0A0B4J280 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
TRAV40A0A0B4J280 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC15.81■□□□□ 0.12
TRAV40A0A0B4J280 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC15.81■□□□□ 0.12
TRAV40A0A0B4J280 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC15.81■□□□□ 0.12
TRAV40A0A0B4J280 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
TRAV40A0A0B4J280 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
TRAV40A0A0B4J280 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC15.8■□□□□ 0.12
TRAV40A0A0B4J280 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC15.8■□□□□ 0.12
TRAV40A0A0B4J280 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC15.8■□□□□ 0.12
TRAV40A0A0B4J280 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TRAV40A0A0B4J280 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
TRAV40A0A0B4J280 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
TRAV40A0A0B4J280 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
TRAV40A0A0B4J280 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms