Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC7.32□□□□□ -1.24
LIMD1Q9UGP4 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC7.32□□□□□ -1.24
LIMD1Q9UGP4 AP001330.4-201ENST00000604350 154 ntBASIC7.32□□□□□ -1.24
LIMD1Q9UGP4 AL513478.2-201ENST00000610400 988 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
LIMD1Q9UGP4 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
LIMD1Q9UGP4 OR2L1P-202ENST00000641567 1023 ntBASIC7.32□□□□□ -1.24
LIMD1Q9UGP4 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC7.32□□□□□ -1.24
LIMD1Q9UGP4 APP-206ENST00000359726 3294 ntTSL 2 BASIC7.32□□□□□ -1.24
LIMD1Q9UGP4 MAP4K4-203ENST00000347699 3792 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
LIMD1Q9UGP4 BMPR1APS1-201ENST00000403332 1598 ntBASIC7.32□□□□□ -1.24
LIMD1Q9UGP4 CD86-209ENST00000493101 1572 ntTSL 2 BASIC7.32□□□□□ -1.24
LIMD1Q9UGP4 TCP11X2-202ENST00000453326 1747 ntAPPRIS P1 TSL 2 BASIC7.32□□□□□ -1.24
LIMD1Q9UGP4 TCP11X1-201ENST00000597070 1747 ntTSL 2 BASIC7.32□□□□□ -1.24
LIMD1Q9UGP4 BCL2L14-203ENST00000308721 1897 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
LIMD1Q9UGP4 TRIM42-201ENST00000286349 2539 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
LIMD1Q9UGP4 ZNF426-201ENST00000253115 7085 ntAPPRIS P3 TSL 1 (best) BASIC7.32□□□□□ -1.24
LIMD1Q9UGP4 MAPK10-280ENST00000641166 2684 ntAPPRIS ALT1 BASIC7.32□□□□□ -1.24
LIMD1Q9UGP4 RBM23-203ENST00000359890 10040 ntAPPRIS P4 TSL 1 (best) BASIC7.32□□□□□ -1.24
LIMD1Q9UGP4 KLHL41-201ENST00000284669 2464 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
LIMD1Q9UGP4 VTCN1-203ENST00000369458 2612 ntAPPRIS P2 TSL 1 (best) BASIC7.31□□□□□ -1.24
LIMD1Q9UGP4 AC019197.1-202ENST00000414885 2639 ntTSL 5 BASIC7.31□□□□□ -1.24
LIMD1Q9UGP4 UG0898H09-202ENST00000623646 7040 ntBASIC7.31□□□□□ -1.24
LIMD1Q9UGP4 KLHL4-201ENST00000373114 2445 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
LIMD1Q9UGP4 GARNL3-202ENST00000373387 3800 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
LIMD1Q9UGP4 BDNF-207ENST00000395986 3979 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
LIMD1Q9UGP4 UPF2-203ENST00000397053 5369 ntAPPRIS P1 TSL 5 BASIC7.31□□□□□ -1.24
LIMD1Q9UGP4 ANKRD36BP2-207ENST00000622311 5398 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
LIMD1Q9UGP4 AC012213.2-201ENST00000562917 4597 ntBASIC7.31□□□□□ -1.24
LIMD1Q9UGP4 AL671511.1-201ENST00000425033 3458 ntTSL 2 BASIC7.31□□□□□ -1.24
LIMD1Q9UGP4 CR1-204ENST00000367052 7469 ntTSL 5 BASIC7.31□□□□□ -1.24
LIMD1Q9UGP4 CR1-205ENST00000367053 7469 ntTSL 5 BASIC7.31□□□□□ -1.24
LIMD1Q9UGP4 CCDC129-203ENST00000409210 3773 ntAPPRIS ALT2 TSL 2 BASIC7.31□□□□□ -1.24
LIMD1Q9UGP4 IFNW1-201ENST00000380229 1932 ntAPPRIS P1 BASIC7.31□□□□□ -1.24
LIMD1Q9UGP4 ERRFI1-202ENST00000467067 2097 ntTSL 2 BASIC7.31□□□□□ -1.24
LIMD1Q9UGP4 ASAH1-267ENST00000637991 2399 ntTSL 5 BASIC7.31□□□□□ -1.24
LIMD1Q9UGP4 CUL1-204ENST00000617797 2508 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
LIMD1Q9UGP4 TRIM5-202ENST00000380034 2991 ntAPPRIS P1 TSL 2 BASIC7.31□□□□□ -1.24
LIMD1Q9UGP4 REG1A-201ENST00000233735 808 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
LIMD1Q9UGP4 TIA1-201ENST00000282574 3823 ntTSL 5 BASIC7.31□□□□□ -1.24
LIMD1Q9UGP4 OR5B2-201ENST00000302581 1049 ntAPPRIS P1 BASIC7.31□□□□□ -1.24
LIMD1Q9UGP4 OR13G1-201ENST00000359688 1046 ntAPPRIS P1 BASIC7.31□□□□□ -1.24
LIMD1Q9UGP4 Y_RNA.231-201ENST00000364358 102 ntBASIC7.31□□□□□ -1.24
LIMD1Q9UGP4 RN7SKP15-201ENST00000364742 309 ntBASIC7.31□□□□□ -1.24
LIMD1Q9UGP4 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
LIMD1Q9UGP4 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
LIMD1Q9UGP4 RNU6-639P-201ENST00000384074 107 ntBASIC7.31□□□□□ -1.24
LIMD1Q9UGP4 MIR649-201ENST00000384843 97 ntBASIC7.31□□□□□ -1.24
LIMD1Q9UGP4 TRBV25-1-202ENST00000390398 381 ntAPPRIS P1 BASIC7.31□□□□□ -1.24
LIMD1Q9UGP4 SNORD37.1-201ENST00000390968 65 ntBASIC7.31□□□□□ -1.24
LIMD1Q9UGP4 RNU6-1055P-201ENST00000391085 107 ntBASIC7.31□□□□□ -1.24
LIMD1Q9UGP4 RPL7P60-201ENST00000397636 735 ntBASIC7.31□□□□□ -1.24
LIMD1Q9UGP4 AC008060.2-201ENST00000415333 468 ntTSL 3 BASIC7.31□□□□□ -1.24
LIMD1Q9UGP4 AC048351.1-201ENST00000420064 602 ntBASIC7.31□□□□□ -1.24
LIMD1Q9UGP4 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC7.31□□□□□ -1.24
LIMD1Q9UGP4 HSPE1P1-201ENST00000421494 318 ntBASIC7.31□□□□□ -1.24
LIMD1Q9UGP4 AL031846.1-202ENST00000424436 592 ntTSL 2 BASIC7.31□□□□□ -1.24
LIMD1Q9UGP4 AL158832.1-201ENST00000429661 406 ntTSL 3 BASIC7.31□□□□□ -1.24
LIMD1Q9UGP4 AL022237.1-201ENST00000446663 358 ntBASIC7.31□□□□□ -1.24
LIMD1Q9UGP4 RPS26P11-201ENST00000463445 348 ntBASIC7.31□□□□□ -1.24
LIMD1Q9UGP4 AC093627.1-201ENST00000465755 877 ntTSL 3 BASIC7.31□□□□□ -1.24
LIMD1Q9UGP4 GMFBP1-201ENST00000467831 427 ntBASIC7.31□□□□□ -1.24
LIMD1Q9UGP4 RPS26P6-201ENST00000475156 348 ntBASIC7.31□□□□□ -1.24
LIMD1Q9UGP4 RPL7AP10-201ENST00000481016 791 ntBASIC7.31□□□□□ -1.24
LIMD1Q9UGP4 NDUFB2-215ENST00000482954 544 ntTSL 3 BASIC7.31□□□□□ -1.24
LIMD1Q9UGP4 AC093267.1-201ENST00000489176 961 ntBASIC7.31□□□□□ -1.24
LIMD1Q9UGP4 RPL23AP72-201ENST00000492447 435 ntBASIC7.31□□□□□ -1.24
LIMD1Q9UGP4 SSX8-201ENST00000506270 579 ntBASIC7.31□□□□□ -1.24
LIMD1Q9UGP4 USP17L23-201ENST00000506619 551 ntAPPRIS P1 BASIC7.31□□□□□ -1.24
LIMD1Q9UGP4 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
LIMD1Q9UGP4 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC7.31□□□□□ -1.24
LIMD1Q9UGP4 AC105417.1-201ENST00000514691 285 ntBASIC7.31□□□□□ -1.24
LIMD1Q9UGP4 LINC00967-201ENST00000517689 792 ntTSL 5 BASIC7.31□□□□□ -1.24
LIMD1Q9UGP4 LINC02365-202ENST00000520280 607 ntTSL 3 BASIC7.31□□□□□ -1.24
LIMD1Q9UGP4 AC119044.1-202ENST00000548463 339 ntTSL 2 BASIC7.31□□□□□ -1.24
LIMD1Q9UGP4 AC004943.1-202ENST00000558618 503 ntTSL 3 BASIC7.31□□□□□ -1.24
LIMD1Q9UGP4 AC090181.1-201ENST00000560446 264 ntTSL 3 BASIC7.31□□□□□ -1.24
LIMD1Q9UGP4 RN7SL178P-201ENST00000582930 304 ntBASIC7.31□□□□□ -1.24
LIMD1Q9UGP4 PPIAL4C-201ENST00000585245 600 ntAPPRIS P1 BASIC7.31□□□□□ -1.24
LIMD1Q9UGP4 OR7A5-202ENST00000594432 1029 ntAPPRIS P1 BASIC7.31□□□□□ -1.24
LIMD1Q9UGP4 AC010998.2-201ENST00000605549 625 ntTSL 5 BASIC7.31□□□□□ -1.24
LIMD1Q9UGP4 TULP3P1-203ENST00000606237 586 ntTSL 4 BASIC7.31□□□□□ -1.24
LIMD1Q9UGP4 AL627309.6-201ENST00000606857 840 ntBASIC7.31□□□□□ -1.24
LIMD1Q9UGP4 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC7.31□□□□□ -1.24
LIMD1Q9UGP4 AC103710.3-201ENST00000608157 948 ntBASIC7.31□□□□□ -1.24
LIMD1Q9UGP4 AC005899.7-201ENST00000618199 588 ntBASIC7.31□□□□□ -1.24
LIMD1Q9UGP4 PRLR-219ENST00000619676 1402 ntTSL 5 BASIC7.31□□□□□ -1.24
LIMD1Q9UGP4 AC089999.3-201ENST00000622440 577 ntBASIC7.31□□□□□ -1.24
LIMD1Q9UGP4 AC005514.1-201ENST00000623521 208 ntBASIC7.31□□□□□ -1.24
LIMD1Q9UGP4 AC040168.1-201ENST00000623594 991 ntBASIC7.31□□□□□ -1.24
LIMD1Q9UGP4 NOS1-206ENST00000618760 12283 ntTSL 5 BASIC7.31□□□□□ -1.24
LIMD1Q9UGP4 LGI1-228ENST00000637689 1802 ntTSL 5 BASIC7.31□□□□□ -1.24
LIMD1Q9UGP4 AC110079.2-201ENST00000629462 1512 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
LIMD1Q9UGP4 BRWD1-203ENST00000342449 12929 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
LIMD1Q9UGP4 UBE2V1-201ENST00000340309 2536 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
LIMD1Q9UGP4 SIPA1L1-201ENST00000358550 6539 ntAPPRIS ALT1 TSL 2 BASIC7.31□□□□□ -1.24
LIMD1Q9UGP4 LAMB4-201ENST00000205386 5857 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
LIMD1Q9UGP4 AC016831.1-201ENST00000432045 6411 ntTSL 2 BASIC7.3□□□□□ -1.24
LIMD1Q9UGP4 NXF2B-202ENST00000602195 2322 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
LIMD1Q9UGP4 NXF2-202ENST00000625106 2337 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
LIMD1Q9UGP4 COMMD2-203ENST00000473414 3706 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
Retrieved 100 of 98,524 protein–RNA pairs in 72.9 ms