Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AC011477.5-201ENST00000586571 259 ntBASIC7.53□□□□□ -1.2
COL9A1P20849 IGHV3-29-201ENST00000604817 344 ntBASIC7.53□□□□□ -1.2
COL9A1P20849 AL512329.2-201ENST00000607350 548 ntBASIC7.53□□□□□ -1.2
COL9A1P20849 AC009229.3-201ENST00000608056 282 ntBASIC7.53□□□□□ -1.2
COL9A1P20849 AL355365.1-201ENST00000616480 294 ntBASIC7.53□□□□□ -1.2
COL9A1P20849 AC244100.1-202ENST00000621554 382 ntBASIC7.53□□□□□ -1.2
COL9A1P20849 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC7.53□□□□□ -1.2
COL9A1P20849 SNORA43.5-201ENST00000631270 138 ntBASIC7.53□□□□□ -1.2
COL9A1P20849 ANKRD31-201ENST00000274361 6036 ntAPPRIS P2 TSL 5 BASIC7.53□□□□□ -1.2
COL9A1P20849 MRRF-202ENST00000344641 9826 ntAPPRIS P1 TSL 2 BASIC7.53□□□□□ -1.2
COL9A1P20849 EED-203ENST00000351625 1696 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
COL9A1P20849 NQO1-201ENST00000320623 2912 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
COL9A1P20849 HOOK3-201ENST00000307602 14398 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
COL9A1P20849 STK33-208ENST00000447869 3103 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
COL9A1P20849 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC7.53□□□□□ -1.2
COL9A1P20849 AC093775.1-201ENST00000624154 1868 ntBASIC7.53□□□□□ -1.2
COL9A1P20849 AL138756.1-201ENST00000563434 4488 ntTSL 2 BASIC7.53□□□□□ -1.2
COL9A1P20849 CSMD1-206ENST00000520002 11740 ntAPPRIS ALT2 TSL 5 BASIC7.53□□□□□ -1.2
COL9A1P20849 CSMD1-216ENST00000602557 11740 ntAPPRIS ALT2 TSL 5 BASIC7.53□□□□□ -1.2
COL9A1P20849 CLEC4E-201ENST00000299663 2159 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
COL9A1P20849 DCAF5-208ENST00000556847 2791 ntTSL 5 BASIC7.53□□□□□ -1.2
COL9A1P20849 KIF1B-211ENST00000620295 8624 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
COL9A1P20849 PRKCQ-204ENST00000610727 3077 ntTSL 5 BASIC7.53□□□□□ -1.2
COL9A1P20849 HSPA8P18-201ENST00000439846 1928 ntBASIC7.52□□□□□ -1.2
COL9A1P20849 IL31RA-205ENST00000396836 2426 ntTSL 1 (best) BASIC7.52□□□□□ -1.2
COL9A1P20849 AC006600.2-201ENST00000624834 2506 ntBASIC7.52□□□□□ -1.21
COL9A1P20849 KAT7-203ENST00000435742 3638 ntTSL 2 BASIC7.52□□□□□ -1.21
COL9A1P20849 PTPRB-209ENST00000550857 5839 ntAPPRIS ALT2 TSL 1 (best) BASIC7.52□□□□□ -1.21
COL9A1P20849 SYNE3-205ENST00000557275 13488 ntAPPRIS ALT1 TSL 2 BASIC7.52□□□□□ -1.21
COL9A1P20849 FAM114A1-201ENST00000358869 4050 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
COL9A1P20849 CDADC1-201ENST00000251108 3386 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
COL9A1P20849 AC099792.1-203ENST00000634701 2183 ntTSL 5 BASIC7.52□□□□□ -1.21
COL9A1P20849 MDM2-202ENST00000258149 12633 ntAPPRIS P2 TSL 1 (best) BASIC7.52□□□□□ -1.21
COL9A1P20849 PTPRT-204ENST00000373190 12559 ntAPPRIS ALT2 TSL 5 BASIC7.52□□□□□ -1.21
COL9A1P20849 OR56A5-201ENST00000340110 738 ntBASIC7.52□□□□□ -1.21
COL9A1P20849 Y_RNA.39-201ENST00000362620 98 ntBASIC7.52□□□□□ -1.21
COL9A1P20849 RN7SKP275-201ENST00000364626 301 ntBASIC7.52□□□□□ -1.21
COL9A1P20849 OR14A2-201ENST00000366485 945 ntAPPRIS P1 BASIC7.52□□□□□ -1.21
COL9A1P20849 TINAG-203ENST00000370869 782 ntTSL 3 BASIC7.52□□□□□ -1.21
COL9A1P20849 AC073842.1-201ENST00000376482 342 ntTSL 5 BASIC7.52□□□□□ -1.21
COL9A1P20849 RNU6-39P-201ENST00000384344 107 ntBASIC7.52□□□□□ -1.21
COL9A1P20849 Y_RNA.477-201ENST00000384352 108 ntBASIC7.52□□□□□ -1.21
COL9A1P20849 MIR23A-201ENST00000385245 73 ntBASIC7.52□□□□□ -1.21
COL9A1P20849 TRBV6-7-201ENST00000390373 344 ntAPPRIS P1 BASIC7.52□□□□□ -1.21
COL9A1P20849 SNORA17A-201ENST00000391185 133 ntBASIC7.52□□□□□ -1.21
COL9A1P20849 AL031985.1-201ENST00000392713 418 ntBASIC7.52□□□□□ -1.21
COL9A1P20849 RN7SKP286-201ENST00000410894 299 ntBASIC7.52□□□□□ -1.21
COL9A1P20849 RN7SKP207-201ENST00000411204 303 ntBASIC7.52□□□□□ -1.21
COL9A1P20849 RNA5SP280-201ENST00000411230 115 ntBASIC7.52□□□□□ -1.21
COL9A1P20849 AC009413.1-201ENST00000414823 399 ntBASIC7.52□□□□□ -1.21
COL9A1P20849 AC011754.1-201ENST00000415201 491 ntTSL 5 BASIC7.52□□□□□ -1.21
COL9A1P20849 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC7.52□□□□□ -1.21
COL9A1P20849 RPS24P8-201ENST00000431490 402 ntBASIC7.52□□□□□ -1.21
COL9A1P20849 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC7.52□□□□□ -1.21
COL9A1P20849 AC092013.1-201ENST00000438795 332 ntBASIC7.52□□□□□ -1.21
COL9A1P20849 RPL23AP89-201ENST00000439324 255 ntBASIC7.52□□□□□ -1.21
COL9A1P20849 AL161626.1-201ENST00000441480 490 ntBASIC7.52□□□□□ -1.21
COL9A1P20849 AC138207.1-201ENST00000442757 545 ntTSL 3 BASIC7.52□□□□□ -1.21
COL9A1P20849 AC073910.1-201ENST00000445047 438 ntBASIC7.52□□□□□ -1.21
COL9A1P20849 HMGB3P30-201ENST00000457863 606 ntBASIC7.52□□□□□ -1.21
COL9A1P20849 AC117513.1-201ENST00000462792 766 ntTSL 2 BASIC7.52□□□□□ -1.21
COL9A1P20849 AC009269.1-201ENST00000470368 833 ntTSL 3 BASIC7.52□□□□□ -1.21
COL9A1P20849 AC005550.2-201ENST00000476382 318 ntBASIC7.52□□□□□ -1.21
COL9A1P20849 RN7SL88P-201ENST00000480166 299 ntBASIC7.52□□□□□ -1.21
COL9A1P20849 RN7SL332P-201ENST00000482163 254 ntBASIC7.52□□□□□ -1.21
COL9A1P20849 AC068880.2-201ENST00000521016 362 ntTSL 5 BASIC7.52□□□□□ -1.21
COL9A1P20849 AC011979.2-201ENST00000527568 352 ntBASIC7.52□□□□□ -1.21
COL9A1P20849 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC7.52□□□□□ -1.21
COL9A1P20849 AC022080.3-201ENST00000544433 482 ntBASIC7.52□□□□□ -1.21
COL9A1P20849 PSMA6-214ENST00000556506 763 ntTSL 5 BASIC7.52□□□□□ -1.21
COL9A1P20849 NQO1-206ENST00000564043 892 ntTSL 1 (best) BASIC7.52□□□□□ -1.21
COL9A1P20849 AC016229.2-201ENST00000591331 417 ntTSL 2 BASIC7.52□□□□□ -1.21
COL9A1P20849 AC063977.7-201ENST00000594454 337 ntBASIC7.52□□□□□ -1.21
COL9A1P20849 ATP5A1P2-202ENST00000616464 443 ntBASIC7.52□□□□□ -1.21
COL9A1P20849 MIR6719-201ENST00000622428 87 ntBASIC7.52□□□□□ -1.21
COL9A1P20849 SNORA17.5-201ENST00000630429 132 ntBASIC7.52□□□□□ -1.21
COL9A1P20849 AL606534.2-204ENST00000635008 178 ntBASIC7.52□□□□□ -1.21
COL9A1P20849 PIGN-225ENST00000638435 4382 ntTSL 5 BASIC7.52□□□□□ -1.21
COL9A1P20849 EPB41L2-209ENST00000525193 2121 ntTSL 5 BASIC7.52□□□□□ -1.21
COL9A1P20849 ARPP21-207ENST00000417925 3086 ntTSL 2 BASIC7.52□□□□□ -1.21
COL9A1P20849 MAGEB18-201ENST00000325250 1811 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
COL9A1P20849 AC078880.4-201ENST00000617627 1749 ntBASIC7.52□□□□□ -1.21
COL9A1P20849 SLC9A6-214ENST00000637581 4872 ntTSL 5 BASIC7.52□□□□□ -1.21
COL9A1P20849 DPY19L3-205ENST00000586987 5925 ntTSL 5 BASIC7.52□□□□□ -1.21
COL9A1P20849 RSRC2-201ENST00000331738 3520 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
COL9A1P20849 LINC00294-201ENST00000631190 3306 ntBASIC7.52□□□□□ -1.21
COL9A1P20849 CNTNAP2-203ENST00000463592 6076 ntTSL 1 (best) BASIC7.52□□□□□ -1.21
COL9A1P20849 C17orf105-201ENST00000449302 3753 ntAPPRIS P1 TSL 1 (best) BASIC7.51□□□□□ -1.21
COL9A1P20849 NANOG-201ENST00000229307 5183 ntAPPRIS P1 TSL 1 (best) BASIC7.51□□□□□ -1.21
COL9A1P20849 ACTR6-202ENST00000546902 1877 ntTSL 2 BASIC7.51□□□□□ -1.21
COL9A1P20849 PTPN14-205ENST00000543945 3842 ntTSL 5 BASIC7.51□□□□□ -1.21
COL9A1P20849 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC7.51□□□□□ -1.21
COL9A1P20849 FHL1-217ENST00000539015 2310 ntTSL 2 BASIC7.51□□□□□ -1.21
COL9A1P20849 TNR-202ENST00000367674 12949 ntAPPRIS P1 TSL 5 BASIC7.51□□□□□ -1.21
COL9A1P20849 AL355488.2-201ENST00000609909 2850 ntBASIC7.51□□□□□ -1.21
COL9A1P20849 DTNA-205ENST00000399113 2232 ntAPPRIS ALT2 TSL 5 BASIC7.51□□□□□ -1.21
COL9A1P20849 AC121761.1-201ENST00000547326 1482 ntTSL 3 BASIC7.51□□□□□ -1.21
COL9A1P20849 VTCN1-202ENST00000359008 2581 ntAPPRIS ALT2 TSL 5 BASIC7.51□□□□□ -1.21
COL9A1P20849 LRP6-206ENST00000543091 4774 ntTSL 1 (best) BASIC7.51□□□□□ -1.21
COL9A1P20849 CAST-236ENST00000511782 2466 ntAPPRIS ALT2 TSL 2 BASIC7.51□□□□□ -1.21
Retrieved 100 of 98,524 protein–RNA pairs in 117.3 ms