Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 RNF213-220ENST00000582970 21055 ntAPPRIS P2 TSL 1 (best) BASIC2.99□□□□□ -1.93
PRKDCP78527 DGKB-202ENST00000402815 5595 ntAPPRIS ALT1 TSL 5 BASIC2.99□□□□□ -1.93
PRKDCP78527 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC2.99□□□□□ -1.93
PRKDCP78527 KIAA1217-202ENST00000376451 7383 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
PRKDCP78527 RNU2-65P-201ENST00000410162 185 ntBASIC2.99□□□□□ -1.93
PRKDCP78527 AC025750.2-201ENST00000442609 450 ntBASIC2.99□□□□□ -1.93
PRKDCP78527 RPS4XP4-201ENST00000443195 763 ntBASIC2.99□□□□□ -1.93
PRKDCP78527 AC005358.1-201ENST00000445508 1143 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
PRKDCP78527 MTOR-AS1-202ENST00000445982 705 ntTSL 5 BASIC2.99□□□□□ -1.93
PRKDCP78527 CYCSP53-201ENST00000455540 265 ntBASIC2.99□□□□□ -1.93
PRKDCP78527 RPS4XP12-201ENST00000461747 709 ntBASIC2.99□□□□□ -1.93
PRKDCP78527 RN7SL807P-201ENST00000470923 297 ntBASIC2.99□□□□□ -1.93
PRKDCP78527 AC108863.1-201ENST00000520863 650 ntTSL 3 BASIC2.99□□□□□ -1.93
PRKDCP78527 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC2.99□□□□□ -1.93
PRKDCP78527 TNPO1-201ENST00000337273 11183 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
PRKDCP78527 NLN-202ENST00000502464 8354 ntTSL 5 BASIC2.99□□□□□ -1.93
PRKDCP78527 AC100778.3-201ENST00000580060 1750 ntBASIC2.99□□□□□ -1.93
PRKDCP78527 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
PRKDCP78527 LINC01422-201ENST00000434868 6043 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
PRKDCP78527 ZNF93-201ENST00000343769 2648 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
PRKDCP78527 PPBP-201ENST00000296028 715 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
PRKDCP78527 SNORA48.5-201ENST00000391143 135 ntBASIC2.99□□□□□ -1.93
PRKDCP78527 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC2.99□□□□□ -1.93
PRKDCP78527 USP9YP36-201ENST00000424581 829 ntBASIC2.99□□□□□ -1.93
PRKDCP78527 USP9YP31-201ENST00000431405 881 ntBASIC2.99□□□□□ -1.93
PRKDCP78527 NPM1P18-201ENST00000434232 732 ntBASIC2.99□□□□□ -1.93
PRKDCP78527 AC025470.2-201ENST00000506106 897 ntTSL 2 BASIC2.99□□□□□ -1.93
PRKDCP78527 AC079587.1-201ENST00000603846 277 ntBASIC2.99□□□□□ -1.93
PRKDCP78527 MIR6868-201ENST00000611215 58 ntBASIC2.99□□□□□ -1.93
PRKDCP78527 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC2.99□□□□□ -1.93
PRKDCP78527 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC2.99□□□□□ -1.93
PRKDCP78527 NCOR1-201ENST00000268712 10720 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
PRKDCP78527 ZPLD1-202ENST00000466937 1531 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
PRKDCP78527 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
PRKDCP78527 AC015813.1-203ENST00000585065 4722 ntTSL 2 BASIC2.98□□□□□ -1.93
PRKDCP78527 CEP112-204ENST00000537949 2847 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
PRKDCP78527 KIF6-202ENST00000287152 9082 ntAPPRIS P1 TSL 2 BASIC2.98□□□□□ -1.93
PRKDCP78527 UGGT1-201ENST00000259253 10650 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
PRKDCP78527 FAT4-202ENST00000394329 16123 ntAPPRIS P1 TSL 5 BASIC2.98□□□□□ -1.93
PRKDCP78527 PSAT1P4-201ENST00000466500 526 ntBASIC2.98□□□□□ -1.93
PRKDCP78527 EDNRA-204ENST00000506066 1032 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
PRKDCP78527 KRT19P6-201ENST00000510983 209 ntBASIC2.98□□□□□ -1.93
PRKDCP78527 CFL2-206ENST00000556161 546 ntTSL 4 BASIC2.98□□□□□ -1.93
PRKDCP78527 DTNA-225ENST00000595022 6016 ntAPPRIS ALT2 TSL 1 (best) BASIC2.98□□□□□ -1.93
PRKDCP78527 KALRN-204ENST00000360013 10806 ntAPPRIS P5 TSL 5 BASIC2.98□□□□□ -1.93
PRKDCP78527 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC2.98□□□□□ -1.93
PRKDCP78527 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC2.98□□□□□ -1.93
PRKDCP78527 AL672167.1-203ENST00000641299 2975 ntBASIC2.98□□□□□ -1.93
PRKDCP78527 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
PRKDCP78527 IFIT2-203ENST00000638108 3703 ntAPPRIS P2 TSL 5 BASIC2.98□□□□□ -1.93
PRKDCP78527 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC2.98□□□□□ -1.93
PRKDCP78527 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC2.98□□□□□ -1.93
PRKDCP78527 AC107398.3-201ENST00000562284 7000 ntBASIC2.98□□□□□ -1.93
PRKDCP78527 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC2.98□□□□□ -1.93
PRKDCP78527 KLRC1-201ENST00000347831 1332 ntAPPRIS ALT2 TSL 1 (best) BASIC2.98□□□□□ -1.93
PRKDCP78527 AP001432.1-201ENST00000440629 520 ntTSL 2 BASIC2.98□□□□□ -1.93
PRKDCP78527 SERPINA7P1-201ENST00000443077 631 ntBASIC2.98□□□□□ -1.93
PRKDCP78527 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC2.98□□□□□ -1.93
PRKDCP78527 TMPRSS11BNL-205ENST00000514295 1262 ntBASIC2.98□□□□□ -1.93
PRKDCP78527 AC011824.3-201ENST00000585093 563 ntTSL 4 BASIC2.98□□□□□ -1.93
PRKDCP78527 AC136601.2-201ENST00000604356 474 ntBASIC2.98□□□□□ -1.93
PRKDCP78527 HSPE1-MOB4-201ENST00000604458 890 ntAPPRIS P1 TSL 3 BASIC2.98□□□□□ -1.93
PRKDCP78527 C8orf89-203ENST00000625134 507 ntAPPRIS ALT2 TSL 1 (best) BASIC2.98□□□□□ -1.93
PRKDCP78527 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
PRKDCP78527 PPIG-201ENST00000260970 6368 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
PRKDCP78527 ONECUT2-202ENST00000491143 16121 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
PRKDCP78527 WDR89-201ENST00000267522 1687 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
PRKDCP78527 CLIC5-201ENST00000185206 6023 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
PRKDCP78527 PCGEM1-201ENST00000454040 1590 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
PRKDCP78527 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC2.98□□□□□ -1.93
PRKDCP78527 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC2.98□□□□□ -1.93
PRKDCP78527 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
PRKDCP78527 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
PRKDCP78527 EPG5-201ENST00000282041 12633 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
PRKDCP78527 WNT2B-203ENST00000369686 10879 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
PRKDCP78527 AF240627.1-201ENST00000416002 879 ntTSL 3 BASIC2.98□□□□□ -1.93
PRKDCP78527 HNRNPA1P29-201ENST00000426409 879 ntBASIC2.98□□□□□ -1.93
PRKDCP78527 RN7SL812P-201ENST00000493791 279 ntBASIC2.98□□□□□ -1.93
PRKDCP78527 HPRT1P2-201ENST00000505250 544 ntBASIC2.98□□□□□ -1.93
PRKDCP78527 AC069306.1-201ENST00000507006 843 ntBASIC2.98□□□□□ -1.93
PRKDCP78527 AC006064.5-201ENST00000541782 248 ntBASIC2.98□□□□□ -1.93
PRKDCP78527 AC087311.2-201ENST00000549660 320 ntTSL 4 BASIC2.98□□□□□ -1.93
PRKDCP78527 AC015726.1-201ENST00000602353 681 ntBASIC2.98□□□□□ -1.93
PRKDCP78527 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
PRKDCP78527 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC2.98□□□□□ -1.93
PRKDCP78527 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC2.98□□□□□ -1.93
PRKDCP78527 EYA3-204ENST00000436342 5943 ntTSL 2 BASIC2.98□□□□□ -1.93
PRKDCP78527 VANGL1-204ENST00000369510 8647 ntAPPRIS ALT1 TSL 1 (best) BASIC2.98□□□□□ -1.93
PRKDCP78527 PCLO-203ENST00000423517 17147 ntTSL 5 BASIC2.98□□□□□ -1.93
PRKDCP78527 ERBB4-205ENST00000436443 12084 ntAPPRIS ALT2 TSL 1 (best) BASIC2.98□□□□□ -1.93
PRKDCP78527 MCM8-205ENST00000610722 7486 ntAPPRIS P4 TSL 1 (best) BASIC2.98□□□□□ -1.93
PRKDCP78527 SLC15A2-205ENST00000489711 5673 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
PRKDCP78527 RAD17-201ENST00000282891 2135 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
PRKDCP78527 AL079305.1-201ENST00000623159 3008 ntBASIC2.97□□□□□ -1.93
PRKDCP78527 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC2.97□□□□□ -1.93
PRKDCP78527 RNA5SP267-201ENST00000364893 126 ntBASIC2.97□□□□□ -1.93
PRKDCP78527 Z74021.1-201ENST00000423610 407 ntBASIC2.97□□□□□ -1.93
PRKDCP78527 RPS11P1-201ENST00000451072 473 ntBASIC2.97□□□□□ -1.93
PRKDCP78527 AC021713.1-201ENST00000526554 510 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
PRKDCP78527 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC2.97□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 94.8 ms