Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC5.53□□□□□ -1.52
COL18A1P39060 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
COL18A1P39060 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
COL18A1P39060 AL357559.1-201ENST00000622228 274 ntBASIC5.53□□□□□ -1.52
COL18A1P39060 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
COL18A1P39060 RFC1-202ENST00000381897 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL18A1P39060 DNAH3-201ENST00000261383 12394 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL18A1P39060 PTPRZ1-201ENST00000393386 8175 ntAPPRIS P3 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL18A1P39060 PTPRT-201ENST00000356100 12480 ntAPPRIS ALT2 TSL 5 BASIC5.53□□□□□ -1.52
COL18A1P39060 PTPRT-202ENST00000373184 12483 ntAPPRIS ALT2 TSL 5 BASIC5.53□□□□□ -1.52
COL18A1P39060 PTPRT-203ENST00000373187 12453 ntAPPRIS P3 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL18A1P39060 PHLDB2-214ENST00000495180 4159 ntTSL 2 BASIC5.53□□□□□ -1.52
COL18A1P39060 RMDN2-207ENST00000417700 1426 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
COL18A1P39060 PHACTR2P1-201ENST00000605639 1414 ntBASIC5.53□□□□□ -1.52
COL18A1P39060 INPP4B-201ENST00000262992 3741 ntAPPRIS P1 TSL 5 BASIC5.53□□□□□ -1.52
COL18A1P39060 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL18A1P39060 ZNF525-202ENST00000474037 3890 ntAPPRIS P1 TSL 5 BASIC5.53□□□□□ -1.52
COL18A1P39060 PEX2-201ENST00000357039 4317 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
COL18A1P39060 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC5.52□□□□□ -1.53
COL18A1P39060 SNORA5A-201ENST00000384111 134 ntBASIC5.52□□□□□ -1.53
COL18A1P39060 AL590999.1-205ENST00000420293 440 ntTSL 3 BASIC5.52□□□□□ -1.53
COL18A1P39060 LINC00626-201ENST00000420691 955 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
COL18A1P39060 EIF1P3-201ENST00000423841 334 ntBASIC5.52□□□□□ -1.53
COL18A1P39060 DNAJA1P1-201ENST00000425106 1187 ntBASIC5.52□□□□□ -1.53
COL18A1P39060 AC091390.3-201ENST00000426478 338 ntBASIC5.52□□□□□ -1.53
COL18A1P39060 HRH4-202ENST00000426880 909 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
COL18A1P39060 AL590999.1-204ENST00000430595 638 ntTSL 3 BASIC5.52□□□□□ -1.53
COL18A1P39060 GTF3AP5-201ENST00000442645 697 ntBASIC5.52□□□□□ -1.53
COL18A1P39060 AC005358.1-201ENST00000445508 1143 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
COL18A1P39060 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC5.52□□□□□ -1.53
COL18A1P39060 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC5.52□□□□□ -1.53
COL18A1P39060 AC011824.2-203ENST00000579975 633 ntTSL 3 BASIC5.52□□□□□ -1.53
COL18A1P39060 MIR4298-201ENST00000584380 73 ntBASIC5.52□□□□□ -1.53
COL18A1P39060 DARS-AS1-225ENST00000615163 824 ntTSL 5 BASIC5.52□□□□□ -1.53
COL18A1P39060 OR51G1-201ENST00000623849 966 ntAPPRIS P1 BASIC5.52□□□□□ -1.53
COL18A1P39060 LINC01358-205ENST00000625548 874 ntTSL 5 BASIC5.52□□□□□ -1.53
COL18A1P39060 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC5.52□□□□□ -1.53
COL18A1P39060 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC5.52□□□□□ -1.53
COL18A1P39060 AL022393.1-201ENST00000625142 1677 ntBASIC5.52□□□□□ -1.53
COL18A1P39060 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC5.52□□□□□ -1.53
COL18A1P39060 MED13-201ENST00000397786 10465 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
COL18A1P39060 KTN1-202ENST00000395308 4134 ntAPPRIS ALT2 TSL 1 (best) BASIC5.52□□□□□ -1.53
COL18A1P39060 PAPPA-AS1-201ENST00000445861 2450 ntBASIC5.52□□□□□ -1.53
COL18A1P39060 ERCC6-202ENST00000374127 1782 ntBASIC5.52□□□□□ -1.53
COL18A1P39060 FAM91A3P-201ENST00000456826 2544 ntBASIC5.52□□□□□ -1.53
COL18A1P39060 AC093297.3-201ENST00000607056 2517 ntBASIC5.52□□□□□ -1.53
COL18A1P39060 VPS35P1-201ENST00000563400 1518 ntBASIC5.52□□□□□ -1.53
COL18A1P39060 BX322639.1-201ENST00000609841 6590 ntTSL 4 BASIC5.52□□□□□ -1.53
COL18A1P39060 AC097461.1-201ENST00000568928 2821 ntBASIC5.52□□□□□ -1.53
COL18A1P39060 MLH3-201ENST00000355774 7896 ntAPPRIS P1 TSL 5 BASIC5.52□□□□□ -1.53
COL18A1P39060 OR4A15-201ENST00000314706 1035 ntBASIC5.52□□□□□ -1.53
COL18A1P39060 RPL7P58-201ENST00000402913 758 ntBASIC5.52□□□□□ -1.53
COL18A1P39060 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC5.52□□□□□ -1.53
COL18A1P39060 RPS29P19-201ENST00000479709 171 ntBASIC5.52□□□□□ -1.53
COL18A1P39060 AL121834.1-201ENST00000572284 509 ntBASIC5.52□□□□□ -1.53
COL18A1P39060 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC5.52□□□□□ -1.53
COL18A1P39060 AC015967.1-201ENST00000619893 476 ntBASIC5.52□□□□□ -1.53
COL18A1P39060 SLC35A5-206ENST00000492406 4399 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
COL18A1P39060 AC004690.2-201ENST00000472838 1754 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
COL18A1P39060 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
COL18A1P39060 PMCHL1-201ENST00000418902 1917 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
COL18A1P39060 COPB2-205ENST00000507777 3034 ntTSL 2 BASIC5.51□□□□□ -1.53
COL18A1P39060 ICE2-201ENST00000261520 7209 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
COL18A1P39060 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
COL18A1P39060 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
COL18A1P39060 RN7SKP156-201ENST00000410308 342 ntBASIC5.51□□□□□ -1.53
COL18A1P39060 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC5.51□□□□□ -1.53
COL18A1P39060 OR2AH1P-201ENST00000425717 928 ntBASIC5.51□□□□□ -1.53
COL18A1P39060 AC010894.4-201ENST00000454203 457 ntTSL 3 BASIC5.51□□□□□ -1.53
COL18A1P39060 snoU13.24-201ENST00000458998 104 ntBASIC5.51□□□□□ -1.53
COL18A1P39060 RPS20P21-201ENST00000466859 343 ntBASIC5.51□□□□□ -1.53
COL18A1P39060 ATP6V1G1P6-201ENST00000504007 334 ntBASIC5.51□□□□□ -1.53
COL18A1P39060 SNORA74D-201ENST00000516404 141 ntBASIC5.51□□□□□ -1.53
COL18A1P39060 OSBPL9P2-201ENST00000526582 1228 ntBASIC5.51□□□□□ -1.53
COL18A1P39060 AC091117.2-201ENST00000560324 542 ntTSL 4 BASIC5.51□□□□□ -1.53
COL18A1P39060 HSPE1P5-201ENST00000561489 272 ntBASIC5.51□□□□□ -1.53
COL18A1P39060 TTN-AS1-228ENST00000589234 751 ntTSL 5 BASIC5.51□□□□□ -1.53
COL18A1P39060 AL354798.1-201ENST00000622505 329 ntBASIC5.51□□□□□ -1.53
COL18A1P39060 FP236240.3-201ENST00000623061 327 ntBASIC5.51□□□□□ -1.53
COL18A1P39060 CASC19-204ENST00000641001 2055 ntBASIC5.51□□□□□ -1.53
COL18A1P39060 NSD1-201ENST00000347982 7688 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
COL18A1P39060 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
COL18A1P39060 SGCD-202ENST00000435422 9755 ntAPPRIS ALT1 TSL 1 (best) BASIC5.51□□□□□ -1.53
COL18A1P39060 CASC19-284ENST00000642142 1868 ntBASIC5.5□□□□□ -1.53
COL18A1P39060 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC5.5□□□□□ -1.53
COL18A1P39060 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC5.5□□□□□ -1.53
COL18A1P39060 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC5.5□□□□□ -1.53
COL18A1P39060 RNU1-44P-201ENST00000384453 163 ntBASIC5.5□□□□□ -1.53
COL18A1P39060 AL078604.1-201ENST00000404609 466 ntBASIC5.5□□□□□ -1.53
COL18A1P39060 AP001432.1-201ENST00000440629 520 ntTSL 2 BASIC5.5□□□□□ -1.53
COL18A1P39060 BNIP3P41-201ENST00000503774 571 ntBASIC5.5□□□□□ -1.53
COL18A1P39060 RN7SKP141-201ENST00000516167 338 ntBASIC5.5□□□□□ -1.53
COL18A1P39060 RN7SKP157-201ENST00000516174 282 ntBASIC5.5□□□□□ -1.53
COL18A1P39060 AC013549.2-201ENST00000526953 489 ntTSL 3 BASIC5.5□□□□□ -1.53
COL18A1P39060 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC5.5□□□□□ -1.53
COL18A1P39060 AL591770.1-201ENST00000554475 1131 ntTSL 3 BASIC5.5□□□□□ -1.53
COL18A1P39060 PDZPH1P-202ENST00000602846 722 ntTSL 3 BASIC5.5□□□□□ -1.53
COL18A1P39060 AL592436.1-201ENST00000605135 558 ntBASIC5.5□□□□□ -1.53
COL18A1P39060 AC015908.5-201ENST00000623289 343 ntBASIC5.5□□□□□ -1.53
COL18A1P39060 AC009093.8-201ENST00000641769 292 ntBASIC5.5□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 91.2 ms