Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC5.08□□□□□ -1.6
COL4A1P02462 AL592494.1-201ENST00000437523 309 ntTSL 5 BASIC5.08□□□□□ -1.6
COL4A1P02462 VN1R34P-201ENST00000447387 883 ntBASIC5.08□□□□□ -1.6
COL4A1P02462 VN1R32P-201ENST00000452234 905 ntBASIC5.08□□□□□ -1.6
COL4A1P02462 NANOGP10-201ENST00000453325 895 ntBASIC5.08□□□□□ -1.6
COL4A1P02462 DEFB109F-201ENST00000491870 277 ntBASIC5.08□□□□□ -1.6
COL4A1P02462 AC112206.2-204ENST00000504068 793 ntTSL 3 BASIC5.08□□□□□ -1.6
COL4A1P02462 UBE2D3-217ENST00000504211 578 ntTSL 2 BASIC5.08□□□□□ -1.6
COL4A1P02462 AC079907.2-202ENST00000547004 423 ntTSL 2 BASIC5.08□□□□□ -1.6
COL4A1P02462 AL591770.1-201ENST00000554475 1131 ntTSL 3 BASIC5.08□□□□□ -1.6
COL4A1P02462 AP001172.1-201ENST00000602921 581 ntTSL 3 BASIC5.08□□□□□ -1.6
COL4A1P02462 LINC01440-205ENST00000608080 737 ntTSL 3 BASIC5.08□□□□□ -1.6
COL4A1P02462 AC064801.1-201ENST00000612025 407 ntBASIC5.08□□□□□ -1.6
COL4A1P02462 TCF7L2-206ENST00000355995 4073 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
COL4A1P02462 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC5.08□□□□□ -1.6
COL4A1P02462 RALGAPB-202ENST00000397040 8435 ntAPPRIS P3 TSL 1 (best) BASIC5.07□□□□□ -1.6
COL4A1P02462 ZNF573-202ENST00000357309 2124 ntTSL 5 BASIC5.07□□□□□ -1.6
COL4A1P02462 ERC1-222ENST00000589028 9202 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
COL4A1P02462 RABGAP1L-206ENST00000367688 1425 ntTSL 2 BASIC5.07□□□□□ -1.6
COL4A1P02462 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC5.07□□□□□ -1.6
COL4A1P02462 DPP8-203ENST00000341861 8699 ntAPPRIS P4 TSL 2 BASIC5.07□□□□□ -1.6
COL4A1P02462 ACADSB-201ENST00000358776 5859 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
COL4A1P02462 HELZ-207ENST00000580168 6279 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
COL4A1P02462 IL1R1-202ENST00000409329 1862 ntTSL 5 BASIC5.07□□□□□ -1.6
COL4A1P02462 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
COL4A1P02462 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC5.07□□□□□ -1.6
COL4A1P02462 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
COL4A1P02462 OR6C2-201ENST00000322678 939 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
COL4A1P02462 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
COL4A1P02462 RNU6-213P-201ENST00000384051 104 ntBASIC5.07□□□□□ -1.6
COL4A1P02462 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC5.07□□□□□ -1.6
COL4A1P02462 TAF1A-AS1-202ENST00000427540 750 ntTSL 2 BASIC5.07□□□□□ -1.6
COL4A1P02462 CYCSP43-201ENST00000438233 310 ntBASIC5.07□□□□□ -1.6
COL4A1P02462 RPL23AP46-201ENST00000438548 490 ntBASIC5.07□□□□□ -1.6
COL4A1P02462 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
COL4A1P02462 RPL6P5-201ENST00000445678 828 ntBASIC5.07□□□□□ -1.6
COL4A1P02462 BNIP3P41-201ENST00000503774 571 ntBASIC5.07□□□□□ -1.6
COL4A1P02462 MTND4LP31-201ENST00000514859 294 ntBASIC5.07□□□□□ -1.6
COL4A1P02462 SCARNA14-201ENST00000516903 136 ntBASIC5.07□□□□□ -1.6
COL4A1P02462 AC090151.1-201ENST00000520784 730 ntBASIC5.07□□□□□ -1.6
COL4A1P02462 NR1H4-204ENST00000546380 565 ntTSL 3 BASIC5.07□□□□□ -1.6
COL4A1P02462 AC013437.1-201ENST00000549878 414 ntTSL 3 BASIC5.07□□□□□ -1.6
COL4A1P02462 AC011507.1-201ENST00000585364 567 ntTSL 4 BASIC5.07□□□□□ -1.6
COL4A1P02462 AC010503.3-201ENST00000594355 540 ntBASIC5.07□□□□□ -1.6
COL4A1P02462 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
COL4A1P02462 FP236240.3-201ENST00000623061 327 ntBASIC5.07□□□□□ -1.6
COL4A1P02462 AF067845.5-201ENST00000633906 437 ntTSL 3 BASIC5.07□□□□□ -1.6
COL4A1P02462 DBT-202ENST00000370132 10799 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
COL4A1P02462 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
COL4A1P02462 TEAD1-203ENST00000526600 8477 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
COL4A1P02462 MAP3K19-204ENST00000392915 5030 ntAPPRIS P3 TSL 5 BASIC5.07□□□□□ -1.6
COL4A1P02462 SLC30A6-201ENST00000282587 5089 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
COL4A1P02462 CASC19-284ENST00000642142 1868 ntBASIC5.07□□□□□ -1.6
COL4A1P02462 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
COL4A1P02462 PTPRT-203ENST00000373187 12453 ntAPPRIS P3 TSL 1 (best) BASIC5.07□□□□□ -1.6
COL4A1P02462 MECOM-202ENST00000433243 3508 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
COL4A1P02462 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC5.07□□□□□ -1.6
COL4A1P02462 ERCC6-202ENST00000374127 1782 ntBASIC5.06□□□□□ -1.6
COL4A1P02462 SCN2A-207ENST00000631182 8430 ntAPPRIS ALT1 TSL 5 BASIC5.06□□□□□ -1.6
COL4A1P02462 RNU6ATAC-201ENST00000408749 126 ntBASIC5.06□□□□□ -1.6
COL4A1P02462 RN7SKP159-201ENST00000410657 292 ntBASIC5.06□□□□□ -1.6
COL4A1P02462 AL020993.1-201ENST00000420172 297 ntTSL 3 BASIC5.06□□□□□ -1.6
COL4A1P02462 ST7-AS2-203ENST00000434993 918 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
COL4A1P02462 PTMAP3-201ENST00000447474 330 ntBASIC5.06□□□□□ -1.6
COL4A1P02462 AL591473.1-201ENST00000464297 313 ntBASIC5.06□□□□□ -1.6
COL4A1P02462 PLAC8-205ENST00000509973 489 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
COL4A1P02462 TMEM68-206ENST00000519784 1009 ntTSL 3 BASIC5.06□□□□□ -1.6
COL4A1P02462 AC073651.3-201ENST00000545999 417 ntTSL 3 BASIC5.06□□□□□ -1.6
COL4A1P02462 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC5.06□□□□□ -1.6
COL4A1P02462 AC107982.3-201ENST00000584957 985 ntBASIC5.06□□□□□ -1.6
COL4A1P02462 AC099669.2-201ENST00000616549 437 ntBASIC5.06□□□□□ -1.6
COL4A1P02462 AP003400.2-201ENST00000624036 666 ntBASIC5.06□□□□□ -1.6
COL4A1P02462 AC239809.3-202ENST00000628902 686 ntTSL 5 BASIC5.06□□□□□ -1.6
COL4A1P02462 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
COL4A1P02462 CFHR3-205ENST00000471440 1965 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
COL4A1P02462 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC5.06□□□□□ -1.6
COL4A1P02462 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC5.06□□□□□ -1.6
COL4A1P02462 MYO5A-201ENST00000356338 11971 ntAPPRIS ALT1 TSL 1 (best) BASIC5.06□□□□□ -1.6
COL4A1P02462 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
COL4A1P02462 CFL2-201ENST00000298159 6747 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
COL4A1P02462 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
COL4A1P02462 AC016588.2-201ENST00000632484 3021 ntBASIC5.06□□□□□ -1.6
COL4A1P02462 STRBP-204ENST00000447404 6161 ntAPPRIS P1 TSL 2 BASIC5.06□□□□□ -1.6
COL4A1P02462 REV3L-IT1-201ENST00000411895 382 ntTSL 5 BASIC5.05□□□□□ -1.6
COL4A1P02462 AC108032.1-201ENST00000416706 207 ntBASIC5.05□□□□□ -1.6
COL4A1P02462 AC011853.2-201ENST00000526901 774 ntTSL 5 BASIC5.05□□□□□ -1.6
COL4A1P02462 LINC01491-202ENST00000558792 439 ntTSL 3 BASIC5.05□□□□□ -1.6
COL4A1P02462 RN7SL435P-201ENST00000584418 282 ntBASIC5.05□□□□□ -1.6
COL4A1P02462 HMGB2P1-201ENST00000591146 634 ntBASIC5.05□□□□□ -1.6
COL4A1P02462 MIR6868-201ENST00000611215 58 ntBASIC5.05□□□□□ -1.6
COL4A1P02462 AC004777.1-201ENST00000624317 287 ntBASIC5.05□□□□□ -1.6
COL4A1P02462 AC106871.1-201ENST00000568324 3102 ntBASIC5.05□□□□□ -1.6
COL4A1P02462 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
COL4A1P02462 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC5.05□□□□□ -1.6
COL4A1P02462 LINC02060-201ENST00000506041 1626 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
COL4A1P02462 GRIA2-202ENST00000296526 5621 ntAPPRIS P3 TSL 1 (best) BASIC5.05□□□□□ -1.6
COL4A1P02462 STAMBPL1-202ENST00000371924 2208 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
COL4A1P02462 ASAH2-204ENST00000447815 2311 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
COL4A1P02462 LYST-202ENST00000389794 12985 ntTSL 5 BASIC5.05□□□□□ -1.6
COL4A1P02462 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 171.8 ms