Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 TTN-AS1-267ENST00000628826 662 ntTSL 5 BASIC4.38□□□□□ -1.71
COL6A3P12111 LINC00649-203ENST00000427447 9124 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
COL6A3P12111 USP9YP4-201ENST00000424401 1745 ntBASIC4.38□□□□□ -1.71
COL6A3P12111 BMPR1APS1-201ENST00000403332 1598 ntBASIC4.38□□□□□ -1.71
COL6A3P12111 HACD3-209ENST00000566511 1782 ntTSL 5 BASIC4.38□□□□□ -1.71
COL6A3P12111 AC113146.2-201ENST00000560743 1961 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
COL6A3P12111 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
COL6A3P12111 DGKB-202ENST00000402815 5595 ntAPPRIS ALT1 TSL 5 BASIC4.38□□□□□ -1.71
COL6A3P12111 NAV2-216ENST00000540292 11003 ntAPPRIS ALT1 TSL 5 BASIC4.38□□□□□ -1.71
COL6A3P12111 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC4.38□□□□□ -1.71
COL6A3P12111 SNORA70.9-201ENST00000384370 135 ntBASIC4.38□□□□□ -1.71
COL6A3P12111 RNA5SP80-201ENST00000410475 111 ntBASIC4.38□□□□□ -1.71
COL6A3P12111 RN7SKP182-201ENST00000410772 298 ntBASIC4.38□□□□□ -1.71
COL6A3P12111 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC4.38□□□□□ -1.71
COL6A3P12111 LINC01400-201ENST00000426358 947 ntTSL 3 BASIC4.38□□□□□ -1.71
COL6A3P12111 AC003685.1-201ENST00000440430 466 ntTSL 2 BASIC4.38□□□□□ -1.71
COL6A3P12111 RN7SL812P-201ENST00000493791 279 ntBASIC4.38□□□□□ -1.71
COL6A3P12111 AC115522.1-201ENST00000595680 556 ntTSL 4 BASIC4.38□□□□□ -1.71
COL6A3P12111 AC015574.1-205ENST00000611285 524 ntTSL 5 BASIC4.38□□□□□ -1.71
COL6A3P12111 SPTLC3-201ENST00000399002 6169 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
COL6A3P12111 HEMGN-202ENST00000616898 2305 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
COL6A3P12111 RPL7-204ENST00000396467 1526 ntTSL 3 BASIC4.37□□□□□ -1.71
COL6A3P12111 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC4.37□□□□□ -1.71
COL6A3P12111 CRP-203ENST00000368111 512 ntTSL 3 BASIC4.37□□□□□ -1.71
COL6A3P12111 RNA5SP120-201ENST00000410900 112 ntBASIC4.37□□□□□ -1.71
COL6A3P12111 UBE2V1P3-201ENST00000439651 417 ntBASIC4.37□□□□□ -1.71
COL6A3P12111 AP001432.1-201ENST00000440629 520 ntTSL 2 BASIC4.37□□□□□ -1.71
COL6A3P12111 KC877373.1-201ENST00000479066 408 ntBASIC4.37□□□□□ -1.71
COL6A3P12111 RPL21P13-201ENST00000488305 481 ntBASIC4.37□□□□□ -1.71
COL6A3P12111 AC083923.2-203ENST00000520512 372 ntTSL 3 BASIC4.37□□□□□ -1.71
COL6A3P12111 MTCYBP13-201ENST00000578634 1093 ntBASIC4.37□□□□□ -1.71
COL6A3P12111 AL033523.1-201ENST00000605153 153 ntBASIC4.37□□□□□ -1.71
COL6A3P12111 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
COL6A3P12111 MYB-239ENST00000534121 2238 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
COL6A3P12111 CSMD2-210ENST00000619121 13430 ntAPPRIS ALT2 TSL 5 BASIC4.37□□□□□ -1.71
COL6A3P12111 BDP1P-201ENST00000582658 1990 ntBASIC4.37□□□□□ -1.71
COL6A3P12111 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC4.37□□□□□ -1.71
COL6A3P12111 OR11H1-201ENST00000252835 982 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
COL6A3P12111 KCNIP4-202ENST00000382148 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC4.37□□□□□ -1.71
COL6A3P12111 SRY-201ENST00000383070 845 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
COL6A3P12111 LINC01060-205ENST00000512839 716 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
COL6A3P12111 GLYCAM1-202ENST00000546607 553 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
COL6A3P12111 OR11H2-201ENST00000556246 948 ntAPPRIS P1 BASIC4.37□□□□□ -1.71
COL6A3P12111 AC011824.3-201ENST00000585093 563 ntTSL 4 BASIC4.37□□□□□ -1.71
COL6A3P12111 APOC2-203ENST00000590360 744 ntAPPRIS P1 TSL 3 BASIC4.37□□□□□ -1.71
COL6A3P12111 LINC02565-201ENST00000592678 478 ntTSL 2 BASIC4.37□□□□□ -1.71
COL6A3P12111 TRPM7-201ENST00000313478 10400 ntAPPRIS P3 TSL 1 (best) BASIC4.37□□□□□ -1.71
COL6A3P12111 CTSV-203ENST00000538255 4322 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
COL6A3P12111 MAPK6PS2-201ENST00000379571 2060 ntBASIC4.37□□□□□ -1.71
COL6A3P12111 KIAA0391-201ENST00000250377 6118 ntTSL 2 BASIC4.37□□□□□ -1.71
COL6A3P12111 OSBPL9P1-201ENST00000604744 1469 ntBASIC4.37□□□□□ -1.71
COL6A3P12111 ATF7IP-201ENST00000261168 8878 ntAPPRIS P3 TSL 5 BASIC4.37□□□□□ -1.71
COL6A3P12111 AP000808.1-201ENST00000512200 3252 ntTSL 2 BASIC4.37□□□□□ -1.71
COL6A3P12111 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC4.37□□□□□ -1.71
COL6A3P12111 SIPA1L1-201ENST00000358550 6539 ntAPPRIS ALT1 TSL 2 BASIC4.37□□□□□ -1.71
COL6A3P12111 DEFB108B-201ENST00000328698 222 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
COL6A3P12111 DCP2-201ENST00000389063 8947 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
COL6A3P12111 LINC01794-201ENST00000420187 549 ntTSL 4 BASIC4.37□□□□□ -1.71
COL6A3P12111 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC4.37□□□□□ -1.71
COL6A3P12111 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC4.37□□□□□ -1.71
COL6A3P12111 AC093331.2-201ENST00000520459 677 ntTSL 3 BASIC4.37□□□□□ -1.71
COL6A3P12111 AC090617.5-201ENST00000571815 528 ntTSL 3 BASIC4.37□□□□□ -1.71
COL6A3P12111 CCAT2-201ENST00000630920 1752 ntBASIC4.36□□□□□ -1.71
COL6A3P12111 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
COL6A3P12111 ARHGAP32-201ENST00000310343 10111 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
COL6A3P12111 ZNF320-205ENST00000595635 6448 ntAPPRIS P1 TSL 2 BASIC4.36□□□□□ -1.71
COL6A3P12111 PTPN3-204ENST00000446349 8630 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
COL6A3P12111 SNORD3H-201ENST00000384486 214 ntBASIC4.36□□□□□ -1.71
COL6A3P12111 AL021408.1-201ENST00000430428 552 ntTSL 4 BASIC4.36□□□□□ -1.71
COL6A3P12111 RN7SL601P-201ENST00000471221 293 ntBASIC4.36□□□□□ -1.71
COL6A3P12111 TMED11P-201ENST00000479478 690 ntBASIC4.36□□□□□ -1.71
COL6A3P12111 AC139783.2-201ENST00000504847 1145 ntBASIC4.36□□□□□ -1.71
COL6A3P12111 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC4.36□□□□□ -1.71
COL6A3P12111 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC4.36□□□□□ -1.71
COL6A3P12111 AL137849.1-201ENST00000604767 169 ntBASIC4.36□□□□□ -1.71
COL6A3P12111 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC4.36□□□□□ -1.71
COL6A3P12111 HSP90AA4P-202ENST00000506915 2228 ntBASIC4.36□□□□□ -1.71
COL6A3P12111 AF127577.4-201ENST00000432230 5929 ntTSL 5 BASIC4.36□□□□□ -1.71
COL6A3P12111 TCHHL1-201ENST00000368806 3603 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
COL6A3P12111 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC4.36□□□□□ -1.71
COL6A3P12111 PPARGC1B-201ENST00000309241 10568 ntAPPRIS P3 TSL 1 (best) BASIC4.36□□□□□ -1.71
COL6A3P12111 LPAR4-205ENST00000614823 2155 ntAPPRIS P1 TSL 4 BASIC4.36□□□□□ -1.71
COL6A3P12111 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC4.36□□□□□ -1.71
COL6A3P12111 PROX1-AS1-202ENST00000433082 5266 ntTSL 5 BASIC4.36□□□□□ -1.71
COL6A3P12111 GYPE-201ENST00000358615 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
COL6A3P12111 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC4.36□□□□□ -1.71
COL6A3P12111 POSTN-210ENST00000541481 3113 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
COL6A3P12111 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
COL6A3P12111 UBXN7-201ENST00000296328 10568 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
COL6A3P12111 ZFX-211ENST00000539115 6801 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
COL6A3P12111 LINC01492-202ENST00000425157 659 ntTSL 5 BASIC4.36□□□□□ -1.71
COL6A3P12111 ST7-AS2-203ENST00000434993 918 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
COL6A3P12111 FABP3P2-201ENST00000453169 399 ntBASIC4.36□□□□□ -1.71
COL6A3P12111 LINC02000-201ENST00000483245 640 ntTSL 2 BASIC4.36□□□□□ -1.71
COL6A3P12111 TMPRSS11BNL-205ENST00000514295 1262 ntBASIC4.36□□□□□ -1.71
COL6A3P12111 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC4.36□□□□□ -1.71
COL6A3P12111 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC4.36□□□□□ -1.71
COL6A3P12111 MED23-203ENST00000368058 4576 ntTSL 5 BASIC4.36□□□□□ -1.71
COL6A3P12111 AC008691.1-207ENST00000636819 4154 ntTSL 5 BASIC4.36□□□□□ -1.71
COL6A3P12111 TENM4-201ENST00000278550 14000 ntAPPRIS P1 TSL 5 BASIC4.36□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 103.3 ms