Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 C7orf77-201ENST00000616258 548 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
HDDC3Q8N4P3 AL359757.1-201ENST00000623176 255 ntBASIC4.97□□□□□ -1.61
HDDC3Q8N4P3 AC007382.1-201ENST00000624376 2618 ntBASIC4.97□□□□□ -1.61
HDDC3Q8N4P3 MECOM-217ENST00000494292 3939 ntAPPRIS ALT2 TSL 5 BASIC4.97□□□□□ -1.61
HDDC3Q8N4P3 OR2AP1-202ENST00000641114 1548 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
HDDC3Q8N4P3 FPGT-208ENST00000534056 1426 ntTSL 2 BASIC4.97□□□□□ -1.61
HDDC3Q8N4P3 AL359715.4-201ENST00000606629 1436 ntBASIC4.97□□□□□ -1.61
HDDC3Q8N4P3 POPDC3-201ENST00000254765 1345 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
HDDC3Q8N4P3 AC139713.2-209ENST00000509873 1303 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
HDDC3Q8N4P3 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC4.96□□□□□ -1.61
HDDC3Q8N4P3 GABRG2-224ENST00000640574 3150 ntTSL 5 BASIC4.96□□□□□ -1.61
HDDC3Q8N4P3 OR8J3-204ENST00000642058 3806 ntAPPRIS P1 BASIC4.96□□□□□ -1.61
HDDC3Q8N4P3 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC4.96□□□□□ -1.61
HDDC3Q8N4P3 IQCH-202ENST00000358767 3062 ntTSL 5 BASIC4.96□□□□□ -1.61
HDDC3Q8N4P3 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC4.96□□□□□ -1.61
HDDC3Q8N4P3 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC4.96□□□□□ -1.61
HDDC3Q8N4P3 NADK2-203ENST00000397338 3614 ntTSL 2 BASIC4.96□□□□□ -1.61
HDDC3Q8N4P3 AC009229.4-201ENST00000623854 1947 ntBASIC4.96□□□□□ -1.62
HDDC3Q8N4P3 OR14C36-201ENST00000317861 939 ntAPPRIS P1 BASIC4.96□□□□□ -1.62
HDDC3Q8N4P3 AC007618.1-201ENST00000366455 732 ntBASIC4.96□□□□□ -1.62
HDDC3Q8N4P3 APOA2-201ENST00000367990 474 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
HDDC3Q8N4P3 LINC00474-201ENST00000374014 769 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
HDDC3Q8N4P3 AC068538.1-201ENST00000376856 336 ntBASIC4.96□□□□□ -1.62
HDDC3Q8N4P3 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC4.96□□□□□ -1.62
HDDC3Q8N4P3 AL590609.3-201ENST00000411815 210 ntTSL 3 BASIC4.96□□□□□ -1.62
HDDC3Q8N4P3 RPL12P9-201ENST00000412942 488 ntBASIC4.96□□□□□ -1.62
HDDC3Q8N4P3 AL603962.1-201ENST00000413148 436 ntTSL 5 BASIC4.96□□□□□ -1.62
HDDC3Q8N4P3 ARPP21-AS1-201ENST00000415706 542 ntTSL 4 BASIC4.96□□□□□ -1.62
HDDC3Q8N4P3 AL121878.1-201ENST00000418638 859 ntBASIC4.96□□□□□ -1.62
HDDC3Q8N4P3 RPL12P46-201ENST00000436610 195 ntBASIC4.96□□□□□ -1.62
HDDC3Q8N4P3 PCBP1-AS1-237ENST00000452431 1194 ntTSL 4 BASIC4.96□□□□□ -1.62
HDDC3Q8N4P3 PPIAP21-201ENST00000464473 501 ntBASIC4.96□□□□□ -1.62
HDDC3Q8N4P3 AC116562.1-201ENST00000485355 781 ntBASIC4.96□□□□□ -1.62
HDDC3Q8N4P3 AL049874.2-201ENST00000492636 288 ntBASIC4.96□□□□□ -1.62
HDDC3Q8N4P3 AC139713.2-213ENST00000505000 796 ntTSL 2 BASIC4.96□□□□□ -1.62
HDDC3Q8N4P3 LINC01339-201ENST00000505712 440 ntTSL 2 BASIC4.96□□□□□ -1.62
HDDC3Q8N4P3 AC139491.3-201ENST00000509643 684 ntTSL 3 BASIC4.96□□□□□ -1.62
HDDC3Q8N4P3 AC016074.1-201ENST00000518339 636 ntTSL 2 BASIC4.96□□□□□ -1.62
HDDC3Q8N4P3 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC4.96□□□□□ -1.62
HDDC3Q8N4P3 AC009554.1-201ENST00000559251 399 ntTSL 5 BASIC4.96□□□□□ -1.62
HDDC3Q8N4P3 NPM1P47-201ENST00000560843 856 ntBASIC4.96□□□□□ -1.62
HDDC3Q8N4P3 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC4.96□□□□□ -1.62
HDDC3Q8N4P3 AC015912.1-201ENST00000574826 538 ntTSL 3 BASIC4.96□□□□□ -1.62
HDDC3Q8N4P3 NUFIP2-202ENST00000579665 559 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
HDDC3Q8N4P3 AC026620.1-201ENST00000584815 326 ntTSL 3 BASIC4.96□□□□□ -1.62
HDDC3Q8N4P3 MIMT1-201ENST00000597105 1050 ntBASIC4.96□□□□□ -1.62
HDDC3Q8N4P3 PSMA6P4-201ENST00000603247 718 ntBASIC4.96□□□□□ -1.62
HDDC3Q8N4P3 AL138828.1-201ENST00000626414 291 ntTSL 5 BASIC4.96□□□□□ -1.62
HDDC3Q8N4P3 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC4.96□□□□□ -1.62
HDDC3Q8N4P3 CCDC25-212ENST00000640944 261 ntTSL 5 BASIC4.96□□□□□ -1.62
HDDC3Q8N4P3 RGS5-212ENST00000618415 5812 ntTSL 4 BASIC4.96□□□□□ -1.62
HDDC3Q8N4P3 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
HDDC3Q8N4P3 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC4.96□□□□□ -1.62
HDDC3Q8N4P3 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC4.96□□□□□ -1.62
HDDC3Q8N4P3 TRIM36-209ENST00000514154 1952 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
HDDC3Q8N4P3 ADAM7-202ENST00000380789 3358 ntAPPRIS ALT2 TSL 5 BASIC4.96□□□□□ -1.62
HDDC3Q8N4P3 ITCH-207ENST00000535650 2940 ntTSL 2 BASIC4.96□□□□□ -1.62
HDDC3Q8N4P3 CSPP1-201ENST00000262210 4367 ntAPPRIS P3 TSL 1 (best) BASIC4.95□□□□□ -1.62
HDDC3Q8N4P3 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC4.95□□□□□ -1.62
HDDC3Q8N4P3 AC063976.2-201ENST00000425667 3556 ntBASIC4.95□□□□□ -1.62
HDDC3Q8N4P3 EIF2AK2-201ENST00000233057 10042 ntAPPRIS P1 TSL 2 BASIC4.95□□□□□ -1.62
HDDC3Q8N4P3 MED13-201ENST00000397786 10465 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
HDDC3Q8N4P3 HACD4-202ENST00000495827 8267 ntAPPRIS P1 TSL 2 BASIC4.95□□□□□ -1.62
HDDC3Q8N4P3 CROT-204ENST00000442291 1993 ntTSL 5 BASIC4.95□□□□□ -1.62
HDDC3Q8N4P3 CSTA-201ENST00000264474 751 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
HDDC3Q8N4P3 OR5F1-201ENST00000278409 945 ntAPPRIS P1 BASIC4.95□□□□□ -1.62
HDDC3Q8N4P3 OR5AN1-201ENST00000313940 1037 ntAPPRIS P1 BASIC4.95□□□□□ -1.62
HDDC3Q8N4P3 TCEAL7-201ENST00000332431 1177 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
HDDC3Q8N4P3 FHIT-201ENST00000341848 174 ntTSL 3 BASIC4.95□□□□□ -1.62
HDDC3Q8N4P3 TRAV21-201ENST00000390449 343 ntAPPRIS P1 BASIC4.95□□□□□ -1.62
HDDC3Q8N4P3 TRAV23DV6-201ENST00000390451 409 ntAPPRIS P1 BASIC4.95□□□□□ -1.62
HDDC3Q8N4P3 RN7SKP100-201ENST00000411258 284 ntBASIC4.95□□□□□ -1.62
HDDC3Q8N4P3 RNA5SP498-201ENST00000411342 120 ntBASIC4.95□□□□□ -1.62
HDDC3Q8N4P3 ZNF92P1Y-201ENST00000415010 1191 ntBASIC4.95□□□□□ -1.62
HDDC3Q8N4P3 TRGV6-201ENST00000417928 299 ntBASIC4.95□□□□□ -1.62
HDDC3Q8N4P3 AC004074.1-201ENST00000421810 1063 ntBASIC4.95□□□□□ -1.62
HDDC3Q8N4P3 CENPIP1-201ENST00000425713 902 ntBASIC4.95□□□□□ -1.62
HDDC3Q8N4P3 AL158073.1-201ENST00000426848 1104 ntBASIC4.95□□□□□ -1.62
HDDC3Q8N4P3 AL359265.2-201ENST00000434367 631 ntBASIC4.95□□□□□ -1.62
HDDC3Q8N4P3 AL450023.3-201ENST00000440592 271 ntBASIC4.95□□□□□ -1.62
HDDC3Q8N4P3 AP001434.1-201ENST00000444977 287 ntTSL 3 BASIC4.95□□□□□ -1.62
HDDC3Q8N4P3 AL034380.1-201ENST00000448791 306 ntTSL 3 BASIC4.95□□□□□ -1.62
HDDC3Q8N4P3 AC010733.1-201ENST00000451515 401 ntBASIC4.95□□□□□ -1.62
HDDC3Q8N4P3 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC4.95□□□□□ -1.62
HDDC3Q8N4P3 RPL23AP56-201ENST00000460778 453 ntBASIC4.95□□□□□ -1.62
HDDC3Q8N4P3 AC010326.1-201ENST00000462726 602 ntBASIC4.95□□□□□ -1.62
HDDC3Q8N4P3 LINC02050-201ENST00000473938 712 ntTSL 3 BASIC4.95□□□□□ -1.62
HDDC3Q8N4P3 NPM1P29-201ENST00000483112 803 ntBASIC4.95□□□□□ -1.62
HDDC3Q8N4P3 AC010627.1-201ENST00000503819 1294 ntBASIC4.95□□□□□ -1.62
HDDC3Q8N4P3 AK3P4-201ENST00000504283 583 ntBASIC4.95□□□□□ -1.62
HDDC3Q8N4P3 ENPP7P9-201ENST00000514456 627 ntBASIC4.95□□□□□ -1.62
HDDC3Q8N4P3 RNU6-347P-201ENST00000516658 105 ntBASIC4.95□□□□□ -1.62
HDDC3Q8N4P3 RBPMS-207ENST00000519647 780 ntTSL 5 BASIC4.95□□□□□ -1.62
HDDC3Q8N4P3 AC025434.1-201ENST00000520705 460 ntTSL 3 BASIC4.95□□□□□ -1.62
HDDC3Q8N4P3 AC024681.2-201ENST00000523525 204 ntTSL 5 BASIC4.95□□□□□ -1.62
HDDC3Q8N4P3 AC027369.5-201ENST00000533838 755 ntBASIC4.95□□□□□ -1.62
HDDC3Q8N4P3 AP001880.2-201ENST00000538233 448 ntBASIC4.95□□□□□ -1.62
HDDC3Q8N4P3 AC109462.2-201ENST00000558730 763 ntTSL 3 BASIC4.95□□□□□ -1.62
HDDC3Q8N4P3 ARPP19-204ENST00000563277 955 ntTSL 2 BASIC4.95□□□□□ -1.62
HDDC3Q8N4P3 MTCYBP13-201ENST00000578634 1093 ntBASIC4.95□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 80.7 ms