Protein–RNA interactions for Protein: P23469

PTPRE, Receptor-type tyrosine-protein phosphatase epsilon, humanhuman

Predictions only

Length 700 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPREP23469 ATXN2-214ENST00000535949 3205 ntAPPRIS ALT2 TSL 1 (best) BASIC8.25□□□□□ -1.09
PTPREP23469 MTFR1L-207ENST00000466284 3262 ntTSL 2 BASIC8.25□□□□□ -1.09
PTPREP23469 SEC31A-207ENST00000443462 4042 ntTSL 2 BASIC8.25□□□□□ -1.09
PTPREP23469 BMPR2-202ENST00000374580 11461 ntAPPRIS P1 TSL 1 (best) BASIC8.24□□□□□ -1.09
PTPREP23469 PBLD-203ENST00000336578 2449 ntTSL 1 (best) BASIC8.24□□□□□ -1.09
PTPREP23469 ZBED3-AS1-216ENST00000515356 1987 ntTSL 2 BASIC8.24□□□□□ -1.09
PTPREP23469 RAB14-201ENST00000373840 4145 ntAPPRIS P1 TSL 1 (best) BASIC8.24□□□□□ -1.09
PTPREP23469 CTNNA1-244ENST00000627109 3831 ntTSL 5 BASIC8.24□□□□□ -1.09
PTPREP23469 PDLIM5-219ENST00000514743 3356 ntTSL 2 BASIC8.24□□□□□ -1.09
PTPREP23469 RBM43-201ENST00000331426 4192 ntAPPRIS P2 TSL 1 (best) BASIC8.24□□□□□ -1.09
PTPREP23469 MTMR7-201ENST00000180173 3850 ntAPPRIS P1 TSL 1 (best) BASIC8.24□□□□□ -1.09
PTPREP23469 CLIP1-AS1-201ENST00000535976 1745 ntTSL 3 BASIC8.24□□□□□ -1.09
PTPREP23469 GABRA1-211ENST00000635880 1739 ntAPPRIS P1 TSL 5 BASIC8.24□□□□□ -1.09
PTPREP23469 EPB41-201ENST00000343067 5956 ntAPPRIS P1 TSL 5 BASIC8.24□□□□□ -1.09
PTPREP23469 SOX6-208ENST00000527619 2699 ntAPPRIS ALT2 TSL 1 (best) BASIC8.24□□□□□ -1.09
PTPREP23469 FAM71F1-207ENST00000485070 1574 ntTSL 2 BASIC8.24□□□□□ -1.09
PTPREP23469 OFD1P10Y-201ENST00000434110 1433 ntBASIC8.24□□□□□ -1.09
PTPREP23469 HNMT-201ENST00000280096 504 ntTSL 1 (best) BASIC8.24□□□□□ -1.09
PTPREP23469 RNU6-492P-201ENST00000363035 104 ntBASIC8.24□□□□□ -1.09
PTPREP23469 RNU6-238P-201ENST00000363313 106 ntBASIC8.24□□□□□ -1.09
PTPREP23469 RNU6-1032P-201ENST00000384100 107 ntBASIC8.24□□□□□ -1.09
PTPREP23469 Y_RNA.552-201ENST00000384665 112 ntBASIC8.24□□□□□ -1.09
PTPREP23469 FABP6-202ENST00000402432 572 ntAPPRIS P1 TSL 1 (best) BASIC8.24□□□□□ -1.09
PTPREP23469 SUMO2P13-201ENST00000403109 272 ntBASIC8.24□□□□□ -1.09
PTPREP23469 GGA1-205ENST00000405147 575 ntTSL 4 BASIC8.24□□□□□ -1.09
PTPREP23469 RN7SKP146-201ENST00000410242 334 ntBASIC8.24□□□□□ -1.09
PTPREP23469 AC068138.1-201ENST00000412635 217 ntBASIC8.24□□□□□ -1.09
PTPREP23469 RPL3P11-201ENST00000434028 1146 ntBASIC8.24□□□□□ -1.09
PTPREP23469 RPEP4-201ENST00000437636 602 ntBASIC8.24□□□□□ -1.09
PTPREP23469 AC083855.1-201ENST00000440041 258 ntBASIC8.24□□□□□ -1.09
PTPREP23469 TXNP1-201ENST00000441872 371 ntBASIC8.24□□□□□ -1.09
PTPREP23469 AL035666.1-201ENST00000446195 348 ntBASIC8.24□□□□□ -1.09
PTPREP23469 AC104058.1-201ENST00000448028 297 ntBASIC8.24□□□□□ -1.09
PTPREP23469 SLC31A1P1-201ENST00000451221 567 ntBASIC8.24□□□□□ -1.09
PTPREP23469 MRPS31P2-201ENST00000451581 518 ntBASIC8.24□□□□□ -1.09
PTPREP23469 BX248409.1-201ENST00000455497 255 ntBASIC8.24□□□□□ -1.09
PTPREP23469 AC021074.2-201ENST00000468434 172 ntBASIC8.24□□□□□ -1.09
PTPREP23469 CFLAR-223ENST00000479953 1230 ntTSL 2 BASIC8.24□□□□□ -1.09
PTPREP23469 AC106872.2-201ENST00000494303 480 ntBASIC8.24□□□□□ -1.09
PTPREP23469 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC8.24□□□□□ -1.09
PTPREP23469 AC009567.2-201ENST00000502989 349 ntBASIC8.24□□□□□ -1.09
PTPREP23469 AC021088.1-201ENST00000506519 805 ntTSL 3 BASIC8.24□□□□□ -1.09
PTPREP23469 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC8.24□□□□□ -1.09
PTPREP23469 Y_RNA.668-201ENST00000516233 93 ntBASIC8.24□□□□□ -1.09
PTPREP23469 GLYATL1P4-201ENST00000529326 906 ntBASIC8.24□□□□□ -1.09
PTPREP23469 OR5B10P-201ENST00000532869 642 ntBASIC8.24□□□□□ -1.09
PTPREP23469 AC022509.1-203ENST00000541940 708 ntTSL 4 BASIC8.24□□□□□ -1.09
PTPREP23469 CBX5-204ENST00000550411 894 ntAPPRIS P1 TSL 1 (best) BASIC8.24□□□□□ -1.09
PTPREP23469 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC8.24□□□□□ -1.09
PTPREP23469 AC024267.2-201ENST00000582737 417 ntBASIC8.24□□□□□ -1.09
PTPREP23469 AC012593.1-208ENST00000587791 696 ntTSL 5 BASIC8.24□□□□□ -1.09
PTPREP23469 AC010463.3-201ENST00000594077 500 ntBASIC8.24□□□□□ -1.09
PTPREP23469 AC010463.2-201ENST00000597592 661 ntTSL 5 BASIC8.24□□□□□ -1.09
PTPREP23469 PRR13P7-201ENST00000605538 430 ntBASIC8.24□□□□□ -1.09
PTPREP23469 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC8.24□□□□□ -1.09
PTPREP23469 AC062037.2-201ENST00000610137 73 ntBASIC8.24□□□□□ -1.09
PTPREP23469 AL162373.1-201ENST00000620433 407 ntBASIC8.24□□□□□ -1.09
PTPREP23469 PACRG-211ENST00000621363 360 ntTSL 5 BASIC8.24□□□□□ -1.09
PTPREP23469 AC084816.1-212ENST00000625240 1114 ntTSL 5 BASIC8.24□□□□□ -1.09
PTPREP23469 NXF2B-204ENST00000618302 2884 ntAPPRIS P1 TSL 2 BASIC8.24□□□□□ -1.09
PTPREP23469 LINC00561-201ENST00000565815 2738 ntBASIC8.24□□□□□ -1.09
PTPREP23469 KARSP2-201ENST00000415696 1639 ntBASIC8.24□□□□□ -1.09
PTPREP23469 TMEM217-202ENST00000356757 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC8.24□□□□□ -1.09
PTPREP23469 BRINP3-201ENST00000367462 3142 ntAPPRIS P1 TSL 1 (best) BASIC8.24□□□□□ -1.09
PTPREP23469 USP44-208ENST00000552440 1818 ntTSL 5 BASIC8.24□□□□□ -1.09
PTPREP23469 MTND5P10-201ENST00000603719 1809 ntBASIC8.24□□□□□ -1.09
PTPREP23469 GTF2H3-212ENST00000543341 3329 ntAPPRIS P1 TSL 1 (best) BASIC8.24□□□□□ -1.09
PTPREP23469 MKL2-209ENST00000574045 3309 ntAPPRIS P3 TSL 1 (best) BASIC8.24□□□□□ -1.09
PTPREP23469 GUSBP1-205ENST00000607545 4157 ntTSL 2 BASIC8.24□□□□□ -1.09
PTPREP23469 IYD-202ENST00000344419 8742 ntAPPRIS P1 TSL 1 (best) BASIC8.24□□□□□ -1.09
PTPREP23469 CEP97-206ENST00000494050 2870 ntAPPRIS ALT2 TSL 2 BASIC8.24□□□□□ -1.09
PTPREP23469 PSG1-202ENST00000312439 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC8.23□□□□□ -1.09
PTPREP23469 CEP85-201ENST00000252992 3935 ntAPPRIS P3 TSL 1 (best) BASIC8.23□□□□□ -1.09
PTPREP23469 AC121758.1-201ENST00000557452 3942 ntTSL 2 BASIC8.23□□□□□ -1.09
PTPREP23469 C1S-205ENST00000406697 3076 ntAPPRIS P1 TSL 2 BASIC8.23□□□□□ -1.09
PTPREP23469 SPATA31A1-201ENST00000377647 4256 ntAPPRIS P1 TSL 1 (best) BASIC8.23□□□□□ -1.09
PTPREP23469 SPATA31A7-206ENST00000619167 4256 ntAPPRIS P1 TSL 1 (best) BASIC8.23□□□□□ -1.09
PTPREP23469 C9orf135-AS1-201ENST00000439418 1375 ntTSL 2 BASIC8.23□□□□□ -1.09
PTPREP23469 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC8.23□□□□□ -1.09
PTPREP23469 UIMC1-207ENST00000506128 1945 ntTSL 1 (best) BASIC8.23□□□□□ -1.09
PTPREP23469 ANO6-201ENST00000320560 5975 ntAPPRIS P3 TSL 1 (best) BASIC8.23□□□□□ -1.09
PTPREP23469 RNASEL-201ENST00000367559 4238 ntAPPRIS P1 TSL 1 (best) BASIC8.23□□□□□ -1.09
PTPREP23469 ZNF793-207ENST00000587986 3869 ntTSL 1 (best) BASIC8.23□□□□□ -1.09
PTPREP23469 LINC01537-201ENST00000450804 2450 ntTSL 1 (best) BASIC8.23□□□□□ -1.09
PTPREP23469 TRIM49D1-203ENST00000605881 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC8.23□□□□□ -1.09
PTPREP23469 ZNF625-ZNF20-201ENST00000430024 2651 ntAPPRIS P5 TSL 5 BASIC8.23□□□□□ -1.09
PTPREP23469 SPRY1-201ENST00000339241 2348 ntAPPRIS P1 TSL 1 (best) BASIC8.23□□□□□ -1.09
PTPREP23469 TSC1-201ENST00000298552 8604 ntAPPRIS P1 TSL 1 (best) BASIC8.23□□□□□ -1.09
PTPREP23469 NAT1-206ENST00000518029 2162 ntAPPRIS P1 TSL 1 (best) BASIC8.23□□□□□ -1.09
PTPREP23469 TRIM49B-202ENST00000622138 2162 ntAPPRIS P1 TSL 1 (best) BASIC8.23□□□□□ -1.09
PTPREP23469 RNU6-769P-201ENST00000384407 104 ntBASIC8.23□□□□□ -1.09
PTPREP23469 RPL23AP32-201ENST00000395315 459 ntBASIC8.23□□□□□ -1.09
PTPREP23469 AL591416.1-201ENST00000404015 867 ntBASIC8.23□□□□□ -1.09
PTPREP23469 AL359634.1-202ENST00000404721 284 ntBASIC8.23□□□□□ -1.09
PTPREP23469 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC8.23□□□□□ -1.09
PTPREP23469 AC002504.1-201ENST00000438281 691 ntBASIC8.23□□□□□ -1.09
PTPREP23469 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC8.23□□□□□ -1.09
PTPREP23469 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC8.23□□□□□ -1.09
PTPREP23469 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC8.23□□□□□ -1.09
PTPREP23469 AC116634.1-201ENST00000506926 447 ntTSL 5 BASIC8.23□□□□□ -1.09
Retrieved 100 of 98,524 protein–RNA pairs in 72.7 ms