Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 RNU6-1269P-201ENST00000391139 107 ntBASIC4.88□□□□□ -1.63
MSH3P20585 CCL7-203ENST00000394630 687 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
MSH3P20585 VDAC2P1-201ENST00000399358 958 ntBASIC4.88□□□□□ -1.63
MSH3P20585 Z86062.1-201ENST00000406773 777 ntBASIC4.88□□□□□ -1.63
MSH3P20585 AL391863.2-201ENST00000411838 681 ntTSL 2 BASIC4.88□□□□□ -1.63
MSH3P20585 AL138789.1-201ENST00000425820 960 ntTSL 2 BASIC4.88□□□□□ -1.63
MSH3P20585 DPH5-204ENST00000427040 609 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
MSH3P20585 BRWD1P3-201ENST00000428816 390 ntBASIC4.88□□□□□ -1.63
MSH3P20585 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC4.88□□□□□ -1.63
MSH3P20585 AL034405.1-201ENST00000432062 526 ntTSL 2 BASIC4.88□□□□□ -1.63
MSH3P20585 AC112498.1-201ENST00000444401 332 ntBASIC4.88□□□□□ -1.63
MSH3P20585 AC006326.1-201ENST00000445465 787 ntBASIC4.88□□□□□ -1.63
MSH3P20585 AL031584.1-201ENST00000447169 754 ntBASIC4.88□□□□□ -1.63
MSH3P20585 RNU6-599P-201ENST00000459383 107 ntBASIC4.88□□□□□ -1.63
MSH3P20585 RNU6-1193P-201ENST00000459461 107 ntBASIC4.88□□□□□ -1.63
MSH3P20585 RPS17P2-201ENST00000461663 408 ntBASIC4.88□□□□□ -1.63
MSH3P20585 ZIC4-AS1-201ENST00000462168 268 ntTSL 5 BASIC4.88□□□□□ -1.63
MSH3P20585 RN7SL610P-201ENST00000463845 291 ntBASIC4.88□□□□□ -1.63
MSH3P20585 AP000942.1-201ENST00000463969 747 ntBASIC4.88□□□□□ -1.63
MSH3P20585 AL591473.1-201ENST00000464297 313 ntBASIC4.88□□□□□ -1.63
MSH3P20585 AC116562.1-201ENST00000485355 781 ntBASIC4.88□□□□□ -1.63
MSH3P20585 MTCO2P9-201ENST00000503214 694 ntBASIC4.88□□□□□ -1.63
MSH3P20585 AC104071.1-201ENST00000505636 602 ntTSL 3 BASIC4.88□□□□□ -1.63
MSH3P20585 EDDM3DP-201ENST00000554692 434 ntBASIC4.88□□□□□ -1.63
MSH3P20585 LINC2194-201ENST00000567127 454 ntTSL 3 BASIC4.88□□□□□ -1.63
MSH3P20585 AC104072.1-201ENST00000568817 668 ntBASIC4.88□□□□□ -1.63
MSH3P20585 LINC02520-201ENST00000570443 537 ntTSL 4 BASIC4.88□□□□□ -1.63
MSH3P20585 LINC00511-212ENST00000581183 657 ntTSL 3 BASIC4.88□□□□□ -1.63
MSH3P20585 AC233702.9-201ENST00000581528 203 ntBASIC4.88□□□□□ -1.63
MSH3P20585 AC005242.1-201ENST00000585658 438 ntBASIC4.88□□□□□ -1.63
MSH3P20585 AC008738.1-201ENST00000590117 375 ntTSL 5 BASIC4.88□□□□□ -1.63
MSH3P20585 AC006116.7-201ENST00000590141 756 ntBASIC4.88□□□□□ -1.63
MSH3P20585 AC087783.2-201ENST00000605070 562 ntBASIC4.88□□□□□ -1.63
MSH3P20585 AL096803.3-201ENST00000609032 532 ntBASIC4.88□□□□□ -1.63
MSH3P20585 AC245389.2-201ENST00000616023 576 ntBASIC4.88□□□□□ -1.63
MSH3P20585 AC242843.1-201ENST00000618702 573 ntBASIC4.88□□□□□ -1.63
MSH3P20585 RMST_5.1-201ENST00000618704 126 ntBASIC4.88□□□□□ -1.63
MSH3P20585 RNU6-368P-201ENST00000620928 107 ntBASIC4.88□□□□□ -1.63
MSH3P20585 RNU6-538P-201ENST00000622329 107 ntBASIC4.88□□□□□ -1.63
MSH3P20585 AP000943.4-201ENST00000622912 357 ntBASIC4.88□□□□□ -1.63
MSH3P20585 CASC15-208ENST00000636388 1174 ntTSL 5 BASIC4.88□□□□□ -1.63
MSH3P20585 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
MSH3P20585 AC004982.1-201ENST00000608770 1655 ntTSL 4 BASIC4.88□□□□□ -1.63
MSH3P20585 GRIK2-201ENST00000318991 4317 ntTSL 5 BASIC4.88□□□□□ -1.63
MSH3P20585 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
MSH3P20585 OR10Z1-202ENST00000641002 6323 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
MSH3P20585 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
MSH3P20585 MEG8-223ENST00000638012 3757 ntTSL 5 BASIC4.88□□□□□ -1.63
MSH3P20585 ZNF468-203ENST00000595646 4407 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
MSH3P20585 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC4.87□□□□□ -1.63
MSH3P20585 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
MSH3P20585 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC4.87□□□□□ -1.63
MSH3P20585 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
MSH3P20585 ECM2-202ENST00000375540 1606 ntTSL 2 BASIC4.87□□□□□ -1.63
MSH3P20585 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC4.87□□□□□ -1.63
MSH3P20585 GABRG2-214ENST00000639111 11735 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
MSH3P20585 ZC3H14-205ENST00000393514 2195 ntTSL 5 BASIC4.87□□□□□ -1.63
MSH3P20585 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
MSH3P20585 IL5-201ENST00000231454 816 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
MSH3P20585 TSPAN8-201ENST00000247829 1227 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
MSH3P20585 SAMD13-202ENST00000370669 856 ntAPPRIS P1 TSL 3 BASIC4.87□□□□□ -1.63
MSH3P20585 RNU6-925P-201ENST00000384629 104 ntBASIC4.87□□□□□ -1.63
MSH3P20585 TMBIM7P-201ENST00000418074 855 ntBASIC4.87□□□□□ -1.63
MSH3P20585 GLUD1P9-201ENST00000420997 1173 ntBASIC4.87□□□□□ -1.63
MSH3P20585 AC092162.1-201ENST00000432828 434 ntBASIC4.87□□□□□ -1.63
MSH3P20585 RPL7P11-201ENST00000437586 658 ntBASIC4.87□□□□□ -1.63
MSH3P20585 TTTY22-201ENST00000445253 427 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
MSH3P20585 FCF1P6-201ENST00000456841 595 ntBASIC4.87□□□□□ -1.63
MSH3P20585 CREM-220ENST00000463314 964 ntTSL 2 BASIC4.87□□□□□ -1.63
MSH3P20585 AC018635.1-201ENST00000468292 1030 ntBASIC4.87□□□□□ -1.63
MSH3P20585 RN7SL346P-201ENST00000491561 294 ntBASIC4.87□□□□□ -1.63
MSH3P20585 HMGB1P3-201ENST00000502802 616 ntBASIC4.87□□□□□ -1.63
MSH3P20585 ADGRL3-AS1-202ENST00000504135 542 ntTSL 5 BASIC4.87□□□□□ -1.63
MSH3P20585 EPPIN-WFDC6-201ENST00000504988 1156 ntAPPRIS P1 TSL 2 BASIC4.87□□□□□ -1.63
MSH3P20585 MRPS33P2-201ENST00000507850 322 ntBASIC4.87□□□□□ -1.63
MSH3P20585 NDUFB5P1-201ENST00000508134 564 ntBASIC4.87□□□□□ -1.63
MSH3P20585 AC011389.1-201ENST00000509170 594 ntTSL 4 BASIC4.87□□□□□ -1.63
MSH3P20585 AC112198.4-201ENST00000515450 351 ntBASIC4.87□□□□□ -1.63
MSH3P20585 THUMPD3-AS1-215ENST00000521609 793 ntTSL 5 BASIC4.87□□□□□ -1.63
MSH3P20585 AC013644.1-202ENST00000523166 499 ntTSL 2 BASIC4.87□□□□□ -1.63
MSH3P20585 ATXN3-215ENST00000532032 1191 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
MSH3P20585 AL049830.4-201ENST00000555149 351 ntBASIC4.87□□□□□ -1.63
MSH3P20585 AL161804.1-201ENST00000555600 708 ntTSL 3 BASIC4.87□□□□□ -1.63
MSH3P20585 LINS1-207ENST00000560133 1196 ntTSL 2 BASIC4.87□□□□□ -1.63
MSH3P20585 AC084759.1-201ENST00000561168 290 ntBASIC4.87□□□□□ -1.63
MSH3P20585 LINC02188-201ENST00000562064 550 ntTSL 4 BASIC4.87□□□□□ -1.63
MSH3P20585 L34079.2-201ENST00000597119 561 ntTSL 3 BASIC4.87□□□□□ -1.63
MSH3P20585 MTATP6P2-201ENST00000603319 678 ntBASIC4.87□□□□□ -1.63
MSH3P20585 AC104687.2-201ENST00000604442 342 ntBASIC4.87□□□□□ -1.63
MSH3P20585 AC133644.2-201ENST00000608142 540 ntBASIC4.87□□□□□ -1.63
MSH3P20585 AC095038.2-201ENST00000621464 1070 ntBASIC4.87□□□□□ -1.63
MSH3P20585 AL138955.1-201ENST00000622881 1040 ntBASIC4.87□□□□□ -1.63
MSH3P20585 AC019080.5-201ENST00000624891 757 ntBASIC4.87□□□□□ -1.63
MSH3P20585 LINC02109-206ENST00000629527 854 ntTSL 5 BASIC4.87□□□□□ -1.63
MSH3P20585 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
MSH3P20585 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC4.87□□□□□ -1.63
MSH3P20585 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC4.86□□□□□ -1.63
MSH3P20585 CASC1-204ENST00000395990 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC4.86□□□□□ -1.63
MSH3P20585 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
MSH3P20585 AC239809.3-214ENST00000496508 2513 ntTSL 2 BASIC4.86□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 87.3 ms