Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
DKK3Q9UBP4 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
DKK3Q9UBP4 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC19.55■□□□□ 0.72
DKK3Q9UBP4 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
DKK3Q9UBP4 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
DKK3Q9UBP4 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
DKK3Q9UBP4 EML3-217ENST00000531557 2509 ntTSL 5 BASIC19.55■□□□□ 0.72
DKK3Q9UBP4 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC19.55■□□□□ 0.72
DKK3Q9UBP4 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
DKK3Q9UBP4 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
DKK3Q9UBP4 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC19.55■□□□□ 0.72
DKK3Q9UBP4 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
DKK3Q9UBP4 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC19.55■□□□□ 0.72
DKK3Q9UBP4 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC19.55■□□□□ 0.72
DKK3Q9UBP4 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC19.55■□□□□ 0.72
DKK3Q9UBP4 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC19.55■□□□□ 0.72
DKK3Q9UBP4 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC19.55■□□□□ 0.72
DKK3Q9UBP4 REXO1L10P-201ENST00000615707 1290 ntBASIC19.55■□□□□ 0.72
DKK3Q9UBP4 REXO1L12P-201ENST00000622156 912 ntBASIC19.55■□□□□ 0.72
DKK3Q9UBP4 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC19.55■□□□□ 0.72
DKK3Q9UBP4 ABBA01031674.1-201ENST00000635145 728 ntBASIC19.55■□□□□ 0.72
DKK3Q9UBP4 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
DKK3Q9UBP4 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC19.55■□□□□ 0.72
DKK3Q9UBP4 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC19.55■□□□□ 0.72
DKK3Q9UBP4 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
DKK3Q9UBP4 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
DKK3Q9UBP4 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
DKK3Q9UBP4 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC19.55■□□□□ 0.72
DKK3Q9UBP4 LBX2-AS1-202ENST00000603175 2083 ntBASIC19.55■□□□□ 0.72
DKK3Q9UBP4 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
DKK3Q9UBP4 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC19.54■□□□□ 0.72
DKK3Q9UBP4 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
DKK3Q9UBP4 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
DKK3Q9UBP4 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
DKK3Q9UBP4 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
DKK3Q9UBP4 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC19.54■□□□□ 0.72
DKK3Q9UBP4 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
DKK3Q9UBP4 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC19.54■□□□□ 0.72
DKK3Q9UBP4 BX088651.1-201ENST00000540551 451 ntBASIC19.54■□□□□ 0.72
DKK3Q9UBP4 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC19.54■□□□□ 0.72
DKK3Q9UBP4 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
DKK3Q9UBP4 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
DKK3Q9UBP4 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
DKK3Q9UBP4 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
DKK3Q9UBP4 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
DKK3Q9UBP4 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
DKK3Q9UBP4 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
DKK3Q9UBP4 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
DKK3Q9UBP4 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
DKK3Q9UBP4 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
DKK3Q9UBP4 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
DKK3Q9UBP4 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
DKK3Q9UBP4 FSCN1P1-201ENST00000568912 1481 ntBASIC19.54■□□□□ 0.72
DKK3Q9UBP4 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
DKK3Q9UBP4 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
DKK3Q9UBP4 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
DKK3Q9UBP4 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC19.53■□□□□ 0.72
DKK3Q9UBP4 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
DKK3Q9UBP4 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
DKK3Q9UBP4 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
DKK3Q9UBP4 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
DKK3Q9UBP4 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
DKK3Q9UBP4 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
DKK3Q9UBP4 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
DKK3Q9UBP4 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
DKK3Q9UBP4 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
DKK3Q9UBP4 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC19.53■□□□□ 0.72
DKK3Q9UBP4 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC19.53■□□□□ 0.72
DKK3Q9UBP4 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
DKK3Q9UBP4 GXYLT1P3-201ENST00000453058 1193 ntBASIC19.53■□□□□ 0.72
DKK3Q9UBP4 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC19.53■□□□□ 0.72
DKK3Q9UBP4 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC19.53■□□□□ 0.72
DKK3Q9UBP4 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC19.53■□□□□ 0.72
DKK3Q9UBP4 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC19.53■□□□□ 0.72
DKK3Q9UBP4 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC19.53■□□□□ 0.72
DKK3Q9UBP4 AC073912.3-201ENST00000624414 853 ntBASIC19.53■□□□□ 0.72
DKK3Q9UBP4 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
DKK3Q9UBP4 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC19.53■□□□□ 0.72
DKK3Q9UBP4 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
DKK3Q9UBP4 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
DKK3Q9UBP4 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
DKK3Q9UBP4 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
DKK3Q9UBP4 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
DKK3Q9UBP4 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
DKK3Q9UBP4 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
DKK3Q9UBP4 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC19.52■□□□□ 0.72
DKK3Q9UBP4 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
DKK3Q9UBP4 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
DKK3Q9UBP4 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC19.52■□□□□ 0.72
DKK3Q9UBP4 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
DKK3Q9UBP4 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
DKK3Q9UBP4 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC19.52■□□□□ 0.72
DKK3Q9UBP4 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC19.52■□□□□ 0.72
DKK3Q9UBP4 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC19.52■□□□□ 0.72
DKK3Q9UBP4 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC19.52■□□□□ 0.72
DKK3Q9UBP4 PTPA-216ENST00000432651 857 ntTSL 2 BASIC19.52■□□□□ 0.72
DKK3Q9UBP4 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
DKK3Q9UBP4 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
DKK3Q9UBP4 TSPY15P-201ENST00000457163 923 ntBASIC19.52■□□□□ 0.72
DKK3Q9UBP4 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC19.52■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms