Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
CLCF1Q9UBD9 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC17.32■□□□□ 0.36
CLCF1Q9UBD9 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLCF1Q9UBD9 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CLCF1Q9UBD9 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC17.32■□□□□ 0.36
CLCF1Q9UBD9 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLCF1Q9UBD9 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLCF1Q9UBD9 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLCF1Q9UBD9 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CLCF1Q9UBD9 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
CLCF1Q9UBD9 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC17.31■□□□□ 0.36
CLCF1Q9UBD9 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLCF1Q9UBD9 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CLCF1Q9UBD9 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLCF1Q9UBD9 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
CLCF1Q9UBD9 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CLCF1Q9UBD9 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CLCF1Q9UBD9 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CLCF1Q9UBD9 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC17.31■□□□□ 0.36
CLCF1Q9UBD9 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CLCF1Q9UBD9 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC17.31■□□□□ 0.36
CLCF1Q9UBD9 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC17.31■□□□□ 0.36
CLCF1Q9UBD9 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC17.31■□□□□ 0.36
CLCF1Q9UBD9 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC17.31■□□□□ 0.36
CLCF1Q9UBD9 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC17.31■□□□□ 0.36
CLCF1Q9UBD9 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC17.31■□□□□ 0.36
CLCF1Q9UBD9 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
CLCF1Q9UBD9 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLCF1Q9UBD9 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
CLCF1Q9UBD9 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLCF1Q9UBD9 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
CLCF1Q9UBD9 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CLCF1Q9UBD9 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CLCF1Q9UBD9 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC17.3■□□□□ 0.36
CLCF1Q9UBD9 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLCF1Q9UBD9 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC17.3■□□□□ 0.36
CLCF1Q9UBD9 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLCF1Q9UBD9 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CLCF1Q9UBD9 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLCF1Q9UBD9 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
CLCF1Q9UBD9 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLCF1Q9UBD9 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CLCF1Q9UBD9 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC17.3■□□□□ 0.36
CLCF1Q9UBD9 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLCF1Q9UBD9 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLCF1Q9UBD9 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLCF1Q9UBD9 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC17.3■□□□□ 0.36
CLCF1Q9UBD9 AC004951.3-201ENST00000418645 1148 ntBASIC17.3■□□□□ 0.36
CLCF1Q9UBD9 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC17.3■□□□□ 0.36
CLCF1Q9UBD9 Z85996.1-201ENST00000494644 937 ntBASIC17.3■□□□□ 0.36
CLCF1Q9UBD9 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC17.3■□□□□ 0.36
CLCF1Q9UBD9 AP005242.2-201ENST00000580065 1175 ntBASIC17.3■□□□□ 0.36
CLCF1Q9UBD9 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC17.3■□□□□ 0.36
CLCF1Q9UBD9 AC145285.6-201ENST00000604632 637 ntBASIC17.3■□□□□ 0.36
CLCF1Q9UBD9 GRAMD4P8-201ENST00000605465 1115 ntBASIC17.3■□□□□ 0.36
CLCF1Q9UBD9 AC011298.2-201ENST00000617989 482 ntBASIC17.3■□□□□ 0.36
CLCF1Q9UBD9 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CLCF1Q9UBD9 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC17.3■□□□□ 0.36
CLCF1Q9UBD9 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLCF1Q9UBD9 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLCF1Q9UBD9 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC17.3■□□□□ 0.36
CLCF1Q9UBD9 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLCF1Q9UBD9 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
CLCF1Q9UBD9 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLCF1Q9UBD9 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC17.3■□□□□ 0.36
CLCF1Q9UBD9 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLCF1Q9UBD9 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC17.3■□□□□ 0.36
CLCF1Q9UBD9 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLCF1Q9UBD9 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
CLCF1Q9UBD9 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLCF1Q9UBD9 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CLCF1Q9UBD9 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLCF1Q9UBD9 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLCF1Q9UBD9 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLCF1Q9UBD9 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
CLCF1Q9UBD9 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CLCF1Q9UBD9 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC17.29■□□□□ 0.36
CLCF1Q9UBD9 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLCF1Q9UBD9 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
CLCF1Q9UBD9 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLCF1Q9UBD9 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLCF1Q9UBD9 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLCF1Q9UBD9 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC17.29■□□□□ 0.36
CLCF1Q9UBD9 AL160286.2-201ENST00000567150 934 ntBASIC17.29■□□□□ 0.36
CLCF1Q9UBD9 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC17.29■□□□□ 0.36
CLCF1Q9UBD9 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC17.29■□□□□ 0.36
CLCF1Q9UBD9 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC17.29■□□□□ 0.36
CLCF1Q9UBD9 AC130371.2-201ENST00000619443 611 ntBASIC17.29■□□□□ 0.36
CLCF1Q9UBD9 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLCF1Q9UBD9 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC17.29■□□□□ 0.36
CLCF1Q9UBD9 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLCF1Q9UBD9 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CLCF1Q9UBD9 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC17.29■□□□□ 0.36
CLCF1Q9UBD9 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC17.29■□□□□ 0.36
CLCF1Q9UBD9 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CLCF1Q9UBD9 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
CLCF1Q9UBD9 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC17.29■□□□□ 0.36
CLCF1Q9UBD9 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC17.29■□□□□ 0.36
CLCF1Q9UBD9 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC17.29■□□□□ 0.36
CLCF1Q9UBD9 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 105.4 ms