Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
CUEDC1Q9NWM3 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CUEDC1Q9NWM3 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CUEDC1Q9NWM3 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CUEDC1Q9NWM3 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC18.84■□□□□ 0.61
CUEDC1Q9NWM3 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CUEDC1Q9NWM3 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
CUEDC1Q9NWM3 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CUEDC1Q9NWM3 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CUEDC1Q9NWM3 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
CUEDC1Q9NWM3 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC18.84■□□□□ 0.61
CUEDC1Q9NWM3 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC18.84■□□□□ 0.61
CUEDC1Q9NWM3 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CUEDC1Q9NWM3 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
CUEDC1Q9NWM3 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CUEDC1Q9NWM3 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.61
CUEDC1Q9NWM3 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.61
CUEDC1Q9NWM3 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.61
CUEDC1Q9NWM3 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC18.83■□□□□ 0.61
CUEDC1Q9NWM3 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC18.83■□□□□ 0.61
CUEDC1Q9NWM3 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
CUEDC1Q9NWM3 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC18.83■□□□□ 0.6
CUEDC1Q9NWM3 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CUEDC1Q9NWM3 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CUEDC1Q9NWM3 KRT18P16-201ENST00000510337 1294 ntBASIC18.83■□□□□ 0.6
CUEDC1Q9NWM3 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
CUEDC1Q9NWM3 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC18.83■□□□□ 0.6
CUEDC1Q9NWM3 AC110285.5-201ENST00000611501 352 ntBASIC18.83■□□□□ 0.6
CUEDC1Q9NWM3 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CUEDC1Q9NWM3 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC18.83■□□□□ 0.6
CUEDC1Q9NWM3 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC18.83■□□□□ 0.6
CUEDC1Q9NWM3 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC18.83■□□□□ 0.6
CUEDC1Q9NWM3 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
CUEDC1Q9NWM3 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
CUEDC1Q9NWM3 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
CUEDC1Q9NWM3 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC18.82■□□□□ 0.6
CUEDC1Q9NWM3 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
CUEDC1Q9NWM3 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC18.82■□□□□ 0.6
CUEDC1Q9NWM3 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CUEDC1Q9NWM3 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CUEDC1Q9NWM3 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CUEDC1Q9NWM3 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CUEDC1Q9NWM3 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC18.82■□□□□ 0.6
CUEDC1Q9NWM3 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC18.82■□□□□ 0.6
CUEDC1Q9NWM3 RPS20-210ENST00000523936 899 ntTSL 2 BASIC18.82■□□□□ 0.6
CUEDC1Q9NWM3 TK2-204ENST00000525974 1178 ntTSL 2 BASIC18.82■□□□□ 0.6
CUEDC1Q9NWM3 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC18.82■□□□□ 0.6
CUEDC1Q9NWM3 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC18.82■□□□□ 0.6
CUEDC1Q9NWM3 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC18.82■□□□□ 0.6
CUEDC1Q9NWM3 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC18.82■□□□□ 0.6
CUEDC1Q9NWM3 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC18.82■□□□□ 0.6
CUEDC1Q9NWM3 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CUEDC1Q9NWM3 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC18.82■□□□□ 0.6
CUEDC1Q9NWM3 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC18.82■□□□□ 0.6
CUEDC1Q9NWM3 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC18.81■□□□□ 0.6
CUEDC1Q9NWM3 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
CUEDC1Q9NWM3 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CUEDC1Q9NWM3 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CUEDC1Q9NWM3 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC18.81■□□□□ 0.6
CUEDC1Q9NWM3 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
CUEDC1Q9NWM3 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CUEDC1Q9NWM3 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CUEDC1Q9NWM3 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CUEDC1Q9NWM3 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CUEDC1Q9NWM3 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CUEDC1Q9NWM3 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC18.81■□□□□ 0.6
CUEDC1Q9NWM3 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC18.81■□□□□ 0.6
CUEDC1Q9NWM3 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC18.81■□□□□ 0.6
CUEDC1Q9NWM3 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CUEDC1Q9NWM3 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CUEDC1Q9NWM3 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CUEDC1Q9NWM3 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CUEDC1Q9NWM3 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC18.81■□□□□ 0.6
CUEDC1Q9NWM3 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
CUEDC1Q9NWM3 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CUEDC1Q9NWM3 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CUEDC1Q9NWM3 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC18.8■□□□□ 0.6
CUEDC1Q9NWM3 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CUEDC1Q9NWM3 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CUEDC1Q9NWM3 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CUEDC1Q9NWM3 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CUEDC1Q9NWM3 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
CUEDC1Q9NWM3 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CUEDC1Q9NWM3 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
CUEDC1Q9NWM3 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CUEDC1Q9NWM3 TUBB8P6-201ENST00000436895 1288 ntBASIC18.8■□□□□ 0.6
CUEDC1Q9NWM3 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CUEDC1Q9NWM3 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC18.8■□□□□ 0.6
CUEDC1Q9NWM3 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC18.8■□□□□ 0.6
CUEDC1Q9NWM3 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC18.8■□□□□ 0.6
CUEDC1Q9NWM3 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
CUEDC1Q9NWM3 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CUEDC1Q9NWM3 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CUEDC1Q9NWM3 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CUEDC1Q9NWM3 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
CUEDC1Q9NWM3 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CUEDC1Q9NWM3 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC18.8■□□□□ 0.6
CUEDC1Q9NWM3 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC18.8■□□□□ 0.6
CUEDC1Q9NWM3 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC18.8■□□□□ 0.6
CUEDC1Q9NWM3 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC18.8■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms