Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC18.16■□□□□ 0.5
VCX3AQ9NNX9 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
VCX3AQ9NNX9 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VCX3AQ9NNX9 DPP3P2-201ENST00000416030 1696 ntBASIC18.16■□□□□ 0.5
VCX3AQ9NNX9 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VCX3AQ9NNX9 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VCX3AQ9NNX9 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
VCX3AQ9NNX9 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC18.16■□□□□ 0.5
VCX3AQ9NNX9 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC18.16■□□□□ 0.5
VCX3AQ9NNX9 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC18.16■□□□□ 0.5
VCX3AQ9NNX9 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
VCX3AQ9NNX9 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC18.16■□□□□ 0.5
VCX3AQ9NNX9 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC18.16■□□□□ 0.5
VCX3AQ9NNX9 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
VCX3AQ9NNX9 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VCX3AQ9NNX9 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
VCX3AQ9NNX9 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
VCX3AQ9NNX9 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
VCX3AQ9NNX9 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
VCX3AQ9NNX9 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC18.16■□□□□ 0.5
VCX3AQ9NNX9 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC18.16■□□□□ 0.5
VCX3AQ9NNX9 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
VCX3AQ9NNX9 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
VCX3AQ9NNX9 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
VCX3AQ9NNX9 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VCX3AQ9NNX9 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
VCX3AQ9NNX9 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VCX3AQ9NNX9 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VCX3AQ9NNX9 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
VCX3AQ9NNX9 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VCX3AQ9NNX9 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VCX3AQ9NNX9 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
VCX3AQ9NNX9 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VCX3AQ9NNX9 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
VCX3AQ9NNX9 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC18.15■□□□□ 0.5
VCX3AQ9NNX9 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VCX3AQ9NNX9 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC18.15■□□□□ 0.5
VCX3AQ9NNX9 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
VCX3AQ9NNX9 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VCX3AQ9NNX9 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VCX3AQ9NNX9 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VCX3AQ9NNX9 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
VCX3AQ9NNX9 LTF-203ENST00000426532 2494 ntTSL 2 BASIC18.15■□□□□ 0.5
VCX3AQ9NNX9 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VCX3AQ9NNX9 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC18.15■□□□□ 0.5
VCX3AQ9NNX9 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC18.15■□□□□ 0.5
VCX3AQ9NNX9 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VCX3AQ9NNX9 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VCX3AQ9NNX9 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC18.15■□□□□ 0.5
VCX3AQ9NNX9 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VCX3AQ9NNX9 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VCX3AQ9NNX9 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC18.14■□□□□ 0.5
VCX3AQ9NNX9 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
VCX3AQ9NNX9 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
VCX3AQ9NNX9 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VCX3AQ9NNX9 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
VCX3AQ9NNX9 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
VCX3AQ9NNX9 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
VCX3AQ9NNX9 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC18.14■□□□□ 0.49
VCX3AQ9NNX9 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
VCX3AQ9NNX9 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VCX3AQ9NNX9 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VCX3AQ9NNX9 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
VCX3AQ9NNX9 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
VCX3AQ9NNX9 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
VCX3AQ9NNX9 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC18.14■□□□□ 0.49
VCX3AQ9NNX9 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC18.14■□□□□ 0.49
VCX3AQ9NNX9 AC099791.2-201ENST00000605725 427 ntBASIC18.14■□□□□ 0.49
VCX3AQ9NNX9 AC010997.5-201ENST00000609182 354 ntBASIC18.14■□□□□ 0.49
VCX3AQ9NNX9 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC18.14■□□□□ 0.49
VCX3AQ9NNX9 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC18.14■□□□□ 0.49
VCX3AQ9NNX9 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC18.14■□□□□ 0.49
VCX3AQ9NNX9 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
VCX3AQ9NNX9 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VCX3AQ9NNX9 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
VCX3AQ9NNX9 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VCX3AQ9NNX9 CEP83-AS1-201ENST00000623122 2482 ntBASIC18.14■□□□□ 0.49
VCX3AQ9NNX9 TP73-202ENST00000354437 2140 ntTSL 5 BASIC18.14■□□□□ 0.49
VCX3AQ9NNX9 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VCX3AQ9NNX9 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC18.14■□□□□ 0.49
VCX3AQ9NNX9 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC18.14■□□□□ 0.49
VCX3AQ9NNX9 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
VCX3AQ9NNX9 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VCX3AQ9NNX9 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
VCX3AQ9NNX9 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
VCX3AQ9NNX9 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
VCX3AQ9NNX9 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VCX3AQ9NNX9 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VCX3AQ9NNX9 GOLGA2P11-201ENST00000562660 1621 ntBASIC18.13■□□□□ 0.49
VCX3AQ9NNX9 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC18.13■□□□□ 0.49
VCX3AQ9NNX9 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
VCX3AQ9NNX9 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
VCX3AQ9NNX9 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC18.13■□□□□ 0.49
VCX3AQ9NNX9 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC18.13■□□□□ 0.49
VCX3AQ9NNX9 AC004987.1-201ENST00000428627 508 ntBASIC18.13■□□□□ 0.49
VCX3AQ9NNX9 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
VCX3AQ9NNX9 RNF146-206ENST00000480444 843 ntTSL 2 BASIC18.13■□□□□ 0.49
VCX3AQ9NNX9 AC103834.1-201ENST00000520383 144 ntBASIC18.13■□□□□ 0.49
VCX3AQ9NNX9 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
VCX3AQ9NNX9 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms