Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC24.8■■□□□ 1.56
USP42Q9H9J4 AC011558.1-201ENST00000623459 338 ntBASIC24.8■■□□□ 1.56
USP42Q9H9J4 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
USP42Q9H9J4 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
USP42Q9H9J4 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC24.79■■□□□ 1.56
USP42Q9H9J4 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC24.79■■□□□ 1.56
USP42Q9H9J4 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC24.79■■□□□ 1.56
USP42Q9H9J4 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
USP42Q9H9J4 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC24.79■■□□□ 1.56
USP42Q9H9J4 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC24.79■■□□□ 1.56
USP42Q9H9J4 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC24.79■■□□□ 1.56
USP42Q9H9J4 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC24.79■■□□□ 1.56
USP42Q9H9J4 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC24.79■■□□□ 1.56
USP42Q9H9J4 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC24.79■■□□□ 1.56
USP42Q9H9J4 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC24.79■■□□□ 1.56
USP42Q9H9J4 AL512408.1-201ENST00000569378 2000 ntBASIC24.79■■□□□ 1.56
USP42Q9H9J4 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
USP42Q9H9J4 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC24.78■■□□□ 1.56
USP42Q9H9J4 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC24.78■■□□□ 1.56
USP42Q9H9J4 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
USP42Q9H9J4 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC24.78■■□□□ 1.56
USP42Q9H9J4 PCED1CP-201ENST00000419887 785 ntBASIC24.78■■□□□ 1.56
USP42Q9H9J4 CD320-202ENST00000537716 1119 ntTSL 2 BASIC24.78■■□□□ 1.56
USP42Q9H9J4 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC24.78■■□□□ 1.56
USP42Q9H9J4 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC24.78■■□□□ 1.56
USP42Q9H9J4 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
USP42Q9H9J4 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
USP42Q9H9J4 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
USP42Q9H9J4 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC24.77■■□□□ 1.56
USP42Q9H9J4 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC24.77■■□□□ 1.56
USP42Q9H9J4 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC24.77■■□□□ 1.56
USP42Q9H9J4 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
USP42Q9H9J4 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC24.77■■□□□ 1.56
USP42Q9H9J4 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC24.77■■□□□ 1.56
USP42Q9H9J4 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC24.77■■□□□ 1.56
USP42Q9H9J4 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC24.77■■□□□ 1.56
USP42Q9H9J4 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC24.77■■□□□ 1.56
USP42Q9H9J4 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC24.77■■□□□ 1.56
USP42Q9H9J4 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
USP42Q9H9J4 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
USP42Q9H9J4 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC24.77■■□□□ 1.56
USP42Q9H9J4 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
USP42Q9H9J4 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC24.77■■□□□ 1.56
USP42Q9H9J4 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC24.77■■□□□ 1.56
USP42Q9H9J4 KRT18P48-201ENST00000434763 852 ntBASIC24.77■■□□□ 1.56
USP42Q9H9J4 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC24.77■■□□□ 1.56
USP42Q9H9J4 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
USP42Q9H9J4 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC24.77■■□□□ 1.56
USP42Q9H9J4 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC24.77■■□□□ 1.56
USP42Q9H9J4 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
USP42Q9H9J4 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
USP42Q9H9J4 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
USP42Q9H9J4 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC24.76■■□□□ 1.55
USP42Q9H9J4 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
USP42Q9H9J4 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC24.76■■□□□ 1.55
USP42Q9H9J4 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
USP42Q9H9J4 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC24.76■■□□□ 1.55
USP42Q9H9J4 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC24.76■■□□□ 1.55
USP42Q9H9J4 BET1L-202ENST00000332865 533 ntTSL 5 BASIC24.76■■□□□ 1.55
USP42Q9H9J4 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
USP42Q9H9J4 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC24.76■■□□□ 1.55
USP42Q9H9J4 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC24.76■■□□□ 1.55
USP42Q9H9J4 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC24.76■■□□□ 1.55
USP42Q9H9J4 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
USP42Q9H9J4 DUSP5P1-201ENST00000441325 1139 ntBASIC24.76■■□□□ 1.55
USP42Q9H9J4 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
USP42Q9H9J4 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC24.76■■□□□ 1.55
USP42Q9H9J4 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC24.76■■□□□ 1.55
USP42Q9H9J4 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC24.76■■□□□ 1.55
USP42Q9H9J4 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC24.76■■□□□ 1.55
USP42Q9H9J4 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
USP42Q9H9J4 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC24.76■■□□□ 1.55
USP42Q9H9J4 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC24.76■■□□□ 1.55
USP42Q9H9J4 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC24.76■■□□□ 1.55
USP42Q9H9J4 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
USP42Q9H9J4 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC24.75■■□□□ 1.55
USP42Q9H9J4 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
USP42Q9H9J4 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC24.75■■□□□ 1.55
USP42Q9H9J4 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
USP42Q9H9J4 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC24.75■■□□□ 1.55
USP42Q9H9J4 ANKRD20A18P-201ENST00000359341 492 ntBASIC24.75■■□□□ 1.55
USP42Q9H9J4 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
USP42Q9H9J4 GXYLT1P6-201ENST00000456472 1187 ntBASIC24.75■■□□□ 1.55
USP42Q9H9J4 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC24.75■■□□□ 1.55
USP42Q9H9J4 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC24.75■■□□□ 1.55
USP42Q9H9J4 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
USP42Q9H9J4 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC24.75■■□□□ 1.55
USP42Q9H9J4 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
USP42Q9H9J4 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC24.75■■□□□ 1.55
USP42Q9H9J4 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC24.75■■□□□ 1.55
USP42Q9H9J4 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC24.74■■□□□ 1.55
USP42Q9H9J4 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC24.74■■□□□ 1.55
USP42Q9H9J4 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
USP42Q9H9J4 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
USP42Q9H9J4 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
USP42Q9H9J4 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC24.74■■□□□ 1.55
USP42Q9H9J4 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC24.74■■□□□ 1.55
USP42Q9H9J4 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC24.74■■□□□ 1.55
USP42Q9H9J4 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC24.74■■□□□ 1.55
USP42Q9H9J4 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC24.74■■□□□ 1.55
Retrieved 100 of 98,524 protein–RNA pairs in 83.6 ms