Protein–RNA interactions for Protein: Q9H422

HIPK3, Homeodomain-interacting protein kinase 3, humanhuman

Predictions only

Length 1,215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIPK3Q9H422 CD81-212ENST00000526072 1172 ntTSL 5 BASIC21.32■■□□□ 1
HIPK3Q9H422 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
HIPK3Q9H422 CLN6-214ENST00000636314 442 ntTSL 3 BASIC21.32■■□□□ 1
HIPK3Q9H422 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC21.32■■□□□ 1
HIPK3Q9H422 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
HIPK3Q9H422 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC21.31■■□□□ 1
HIPK3Q9H422 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC21.31■■□□□ 1
HIPK3Q9H422 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
HIPK3Q9H422 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
HIPK3Q9H422 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
HIPK3Q9H422 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
HIPK3Q9H422 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
HIPK3Q9H422 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC21.31■■□□□ 1
HIPK3Q9H422 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC21.31■■□□□ 1
HIPK3Q9H422 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC21.31■■□□□ 1
HIPK3Q9H422 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC21.31■■□□□ 1
HIPK3Q9H422 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC21.31■■□□□ 1
HIPK3Q9H422 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
HIPK3Q9H422 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC21.31■■□□□ 1
HIPK3Q9H422 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
HIPK3Q9H422 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC21.31■■□□□ 1
HIPK3Q9H422 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
HIPK3Q9H422 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
HIPK3Q9H422 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
HIPK3Q9H422 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC21.31■■□□□ 1
HIPK3Q9H422 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
HIPK3Q9H422 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC21.3■■□□□ 1
HIPK3Q9H422 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
HIPK3Q9H422 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC21.3■■□□□ 1
HIPK3Q9H422 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC21.3■■□□□ 1
HIPK3Q9H422 KRT8P45-201ENST00000414328 1447 ntBASIC21.3■■□□□ 1
HIPK3Q9H422 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
HIPK3Q9H422 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
HIPK3Q9H422 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
HIPK3Q9H422 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC21.3■■□□□ 1
HIPK3Q9H422 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
HIPK3Q9H422 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
HIPK3Q9H422 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
HIPK3Q9H422 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC21.3■■□□□ 1
HIPK3Q9H422 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC21.3■■□□□ 1
HIPK3Q9H422 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC21.3■■□□□ 1
HIPK3Q9H422 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC21.3■■□□□ 1
HIPK3Q9H422 AL136038.3-201ENST00000561909 1096 ntBASIC21.3■■□□□ 1
HIPK3Q9H422 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC21.3■■□□□ 1
HIPK3Q9H422 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC21.3■■□□□ 1
HIPK3Q9H422 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC21.3■■□□□ 1
HIPK3Q9H422 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC21.3■■□□□ 1
HIPK3Q9H422 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
HIPK3Q9H422 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC21.3■■□□□ 1
HIPK3Q9H422 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC21.29■■□□□ 1
HIPK3Q9H422 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
HIPK3Q9H422 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
HIPK3Q9H422 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC21.29■■□□□ 1
HIPK3Q9H422 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
HIPK3Q9H422 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC21.29■■□□□ 1
HIPK3Q9H422 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC21.29■■□□□ 1
HIPK3Q9H422 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
HIPK3Q9H422 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC21.29■■□□□ 1
HIPK3Q9H422 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC21.29■■□□□ 1
HIPK3Q9H422 SNX5-210ENST00000481323 562 ntTSL 3 BASIC21.29■■□□□ 1
HIPK3Q9H422 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC21.29■■□□□ 1
HIPK3Q9H422 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC21.29■■□□□ 1
HIPK3Q9H422 CKBP1-201ENST00000565489 1086 ntBASIC21.29■■□□□ 1
HIPK3Q9H422 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC21.29■■□□□ 1
HIPK3Q9H422 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
HIPK3Q9H422 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC21.29■■□□□ 1
HIPK3Q9H422 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
HIPK3Q9H422 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
HIPK3Q9H422 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC21.28■■□□□ 1
HIPK3Q9H422 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC21.28■■□□□ 1
HIPK3Q9H422 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC21.28■■□□□ 1
HIPK3Q9H422 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
HIPK3Q9H422 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
HIPK3Q9H422 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC21.28■■□□□ 1
HIPK3Q9H422 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
HIPK3Q9H422 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
HIPK3Q9H422 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
HIPK3Q9H422 AP000523.1-201ENST00000398242 1049 ntBASIC21.28■■□□□ 1
HIPK3Q9H422 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC21.28■■□□□ 1
HIPK3Q9H422 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC21.28■■□□□ 1
HIPK3Q9H422 AL691432.3-201ENST00000621860 400 ntBASIC21.28■■□□□ 1
HIPK3Q9H422 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
HIPK3Q9H422 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC21.28■■□□□ 1
HIPK3Q9H422 SMG8-203ENST00000578922 2178 ntBASIC21.28■■□□□ 1
HIPK3Q9H422 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC21.28■■□□□ 1
HIPK3Q9H422 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC21.28■■□□□ 1
HIPK3Q9H422 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
HIPK3Q9H422 SLC25A24-204ENST00000569674 2357 ntBASIC21.28■■□□□ 1
HIPK3Q9H422 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
HIPK3Q9H422 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC21.27■■□□□ 1
HIPK3Q9H422 Telomerase-vert.1-201ENST00000363312 438 ntBASIC21.27■■□□□ 1
HIPK3Q9H422 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC21.27■■□□□ 1
HIPK3Q9H422 AC112907.2-201ENST00000448639 330 ntBASIC21.27■■□□□ 1
HIPK3Q9H422 NME1-207ENST00000480143 964 ntTSL 2 BASIC21.27■■□□□ 1
HIPK3Q9H422 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC21.27■■□□□ 1
HIPK3Q9H422 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC21.27■■□□□ 1
HIPK3Q9H422 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC21.27■■□□□ 1
HIPK3Q9H422 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC21.27■■□□□ 1
HIPK3Q9H422 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC21.27■■□□□ 1
HIPK3Q9H422 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC21.27■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms