Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 AC008175.2-201ENST00000612840 297 ntBASIC17.13■□□□□ 0.33
MMP28Q9H239 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC17.13■□□□□ 0.33
MMP28Q9H239 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
MMP28Q9H239 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
MMP28Q9H239 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC17.13■□□□□ 0.33
MMP28Q9H239 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
MMP28Q9H239 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
MMP28Q9H239 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
MMP28Q9H239 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
MMP28Q9H239 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
MMP28Q9H239 AC004854.2-201ENST00000608450 1441 ntBASIC17.13■□□□□ 0.33
MMP28Q9H239 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
MMP28Q9H239 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
MMP28Q9H239 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
MMP28Q9H239 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
MMP28Q9H239 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC17.12■□□□□ 0.33
MMP28Q9H239 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
MMP28Q9H239 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
MMP28Q9H239 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
MMP28Q9H239 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
MMP28Q9H239 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
MMP28Q9H239 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
MMP28Q9H239 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
MMP28Q9H239 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC17.12■□□□□ 0.33
MMP28Q9H239 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
MMP28Q9H239 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
MMP28Q9H239 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
MMP28Q9H239 AC004911.1-201ENST00000416316 871 ntBASIC17.12■□□□□ 0.33
MMP28Q9H239 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC17.12■□□□□ 0.33
MMP28Q9H239 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
MMP28Q9H239 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC17.12■□□□□ 0.33
MMP28Q9H239 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC17.12■□□□□ 0.33
MMP28Q9H239 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC17.12■□□□□ 0.33
MMP28Q9H239 GALNS-213ENST00000569433 723 ntTSL 3 BASIC17.12■□□□□ 0.33
MMP28Q9H239 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC17.12■□□□□ 0.33
MMP28Q9H239 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
MMP28Q9H239 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
MMP28Q9H239 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
MMP28Q9H239 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC17.12■□□□□ 0.33
MMP28Q9H239 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
MMP28Q9H239 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC17.12■□□□□ 0.33
MMP28Q9H239 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
MMP28Q9H239 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC17.12■□□□□ 0.33
MMP28Q9H239 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC17.12■□□□□ 0.33
MMP28Q9H239 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
MMP28Q9H239 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC17.12■□□□□ 0.33
MMP28Q9H239 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC17.12■□□□□ 0.33
MMP28Q9H239 HCG11-201ENST00000411553 5696 ntBASIC17.12■□□□□ 0.33
MMP28Q9H239 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
MMP28Q9H239 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC17.11■□□□□ 0.33
MMP28Q9H239 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
MMP28Q9H239 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
MMP28Q9H239 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
MMP28Q9H239 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
MMP28Q9H239 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC17.11■□□□□ 0.33
MMP28Q9H239 AC099398.1-201ENST00000567919 2776 ntBASIC17.11■□□□□ 0.33
MMP28Q9H239 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
MMP28Q9H239 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC17.11■□□□□ 0.33
MMP28Q9H239 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC17.11■□□□□ 0.33
MMP28Q9H239 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
MMP28Q9H239 POU5F1P4-201ENST00000413175 1085 ntBASIC17.11■□□□□ 0.33
MMP28Q9H239 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC17.11■□□□□ 0.33
MMP28Q9H239 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC17.11■□□□□ 0.33
MMP28Q9H239 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC17.11■□□□□ 0.33
MMP28Q9H239 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC17.11■□□□□ 0.33
MMP28Q9H239 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC17.11■□□□□ 0.33
MMP28Q9H239 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC17.11■□□□□ 0.33
MMP28Q9H239 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC17.11■□□□□ 0.33
MMP28Q9H239 NTF6G-201ENST00000591094 616 ntBASIC17.11■□□□□ 0.33
MMP28Q9H239 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC17.11■□□□□ 0.33
MMP28Q9H239 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
MMP28Q9H239 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
MMP28Q9H239 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
MMP28Q9H239 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
MMP28Q9H239 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC17.11■□□□□ 0.33
MMP28Q9H239 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
MMP28Q9H239 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
MMP28Q9H239 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
MMP28Q9H239 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
MMP28Q9H239 AP004607.4-201ENST00000530158 1459 ntBASIC17.11■□□□□ 0.33
MMP28Q9H239 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
MMP28Q9H239 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC17.11■□□□□ 0.33
MMP28Q9H239 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
MMP28Q9H239 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
MMP28Q9H239 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
MMP28Q9H239 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
MMP28Q9H239 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
MMP28Q9H239 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
MMP28Q9H239 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
MMP28Q9H239 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
MMP28Q9H239 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC17.1■□□□□ 0.33
MMP28Q9H239 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
MMP28Q9H239 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
MMP28Q9H239 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC17.1■□□□□ 0.33
MMP28Q9H239 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
MMP28Q9H239 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC17.1■□□□□ 0.33
MMP28Q9H239 KRT19P1-201ENST00000405746 1186 ntBASIC17.1■□□□□ 0.33
MMP28Q9H239 AC010141.2-201ENST00000452426 721 ntBASIC17.1■□□□□ 0.33
MMP28Q9H239 AC090164.3-201ENST00000610780 2143 ntBASIC17.1■□□□□ 0.33
MMP28Q9H239 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms