Protein–RNA interactions for Protein: Q9H0F5

RNF38, E3 ubiquitin-protein ligase RNF38, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF38Q9H0F5 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
RNF38Q9H0F5 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
RNF38Q9H0F5 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
RNF38Q9H0F5 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC20.19■□□□□ 0.82
RNF38Q9H0F5 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
RNF38Q9H0F5 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
RNF38Q9H0F5 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
RNF38Q9H0F5 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RNF38Q9H0F5 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
RNF38Q9H0F5 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RNF38Q9H0F5 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
RNF38Q9H0F5 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RNF38Q9H0F5 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC20.19■□□□□ 0.82
RNF38Q9H0F5 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
RNF38Q9H0F5 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC20.19■□□□□ 0.82
RNF38Q9H0F5 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC20.19■□□□□ 0.82
RNF38Q9H0F5 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC20.19■□□□□ 0.82
RNF38Q9H0F5 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC20.19■□□□□ 0.82
RNF38Q9H0F5 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RNF38Q9H0F5 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
RNF38Q9H0F5 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC20.19■□□□□ 0.82
RNF38Q9H0F5 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
RNF38Q9H0F5 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RNF38Q9H0F5 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RNF38Q9H0F5 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
RNF38Q9H0F5 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
RNF38Q9H0F5 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RNF38Q9H0F5 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RNF38Q9H0F5 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
RNF38Q9H0F5 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RNF38Q9H0F5 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RNF38Q9H0F5 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC20.18■□□□□ 0.82
RNF38Q9H0F5 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
RNF38Q9H0F5 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
RNF38Q9H0F5 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RNF38Q9H0F5 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC20.18■□□□□ 0.82
RNF38Q9H0F5 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC20.18■□□□□ 0.82
RNF38Q9H0F5 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC20.18■□□□□ 0.82
RNF38Q9H0F5 TK2-213ENST00000563369 882 ntTSL 5 BASIC20.18■□□□□ 0.82
RNF38Q9H0F5 AL160286.2-201ENST00000567150 934 ntBASIC20.18■□□□□ 0.82
RNF38Q9H0F5 SLC25A1P4-201ENST00000567977 778 ntBASIC20.18■□□□□ 0.82
RNF38Q9H0F5 P4HB-223ENST00000576390 439 ntTSL 4 BASIC20.18■□□□□ 0.82
RNF38Q9H0F5 RN7SL850P-201ENST00000579959 291 ntBASIC20.18■□□□□ 0.82
RNF38Q9H0F5 AC005363.2-201ENST00000618631 242 ntBASIC20.18■□□□□ 0.82
RNF38Q9H0F5 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
RNF38Q9H0F5 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
RNF38Q9H0F5 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RNF38Q9H0F5 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC20.18■□□□□ 0.82
RNF38Q9H0F5 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RNF38Q9H0F5 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
RNF38Q9H0F5 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RNF38Q9H0F5 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC20.18■□□□□ 0.82
RNF38Q9H0F5 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
RNF38Q9H0F5 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
RNF38Q9H0F5 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC20.17■□□□□ 0.82
RNF38Q9H0F5 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RNF38Q9H0F5 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
RNF38Q9H0F5 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
RNF38Q9H0F5 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC20.17■□□□□ 0.82
RNF38Q9H0F5 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
RNF38Q9H0F5 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC20.17■□□□□ 0.82
RNF38Q9H0F5 AC005521.1-201ENST00000393351 872 ntBASIC20.17■□□□□ 0.82
RNF38Q9H0F5 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC20.17■□□□□ 0.82
RNF38Q9H0F5 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC20.17■□□□□ 0.82
RNF38Q9H0F5 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC20.17■□□□□ 0.82
RNF38Q9H0F5 AC010331.1-201ENST00000611423 582 ntBASIC20.17■□□□□ 0.82
RNF38Q9H0F5 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC20.17■□□□□ 0.82
RNF38Q9H0F5 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RNF38Q9H0F5 KRT18P22-201ENST00000402024 1347 ntBASIC20.17■□□□□ 0.82
RNF38Q9H0F5 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC20.17■□□□□ 0.82
RNF38Q9H0F5 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
RNF38Q9H0F5 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
RNF38Q9H0F5 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC20.17■□□□□ 0.82
RNF38Q9H0F5 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
RNF38Q9H0F5 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC20.17■□□□□ 0.82
RNF38Q9H0F5 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC20.17■□□□□ 0.82
RNF38Q9H0F5 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC20.17■□□□□ 0.82
RNF38Q9H0F5 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
RNF38Q9H0F5 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC20.16■□□□□ 0.82
RNF38Q9H0F5 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
RNF38Q9H0F5 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RNF38Q9H0F5 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
RNF38Q9H0F5 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
RNF38Q9H0F5 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
RNF38Q9H0F5 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
RNF38Q9H0F5 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
RNF38Q9H0F5 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC20.16■□□□□ 0.82
RNF38Q9H0F5 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC20.16■□□□□ 0.82
RNF38Q9H0F5 TMA16-209ENST00000513272 803 ntTSL 2 BASIC20.16■□□□□ 0.82
RNF38Q9H0F5 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC20.16■□□□□ 0.82
RNF38Q9H0F5 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC20.16■□□□□ 0.82
RNF38Q9H0F5 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
RNF38Q9H0F5 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
RNF38Q9H0F5 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC20.16■□□□□ 0.82
RNF38Q9H0F5 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
RNF38Q9H0F5 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RNF38Q9H0F5 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC20.16■□□□□ 0.82
RNF38Q9H0F5 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC20.16■□□□□ 0.82
RNF38Q9H0F5 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
RNF38Q9H0F5 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms