Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CDX2Q99626 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CDX2Q99626 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
CDX2Q99626 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CDX2Q99626 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CDX2Q99626 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CDX2Q99626 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC20.45■□□□□ 0.86
CDX2Q99626 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
CDX2Q99626 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CDX2Q99626 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CDX2Q99626 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC20.44■□□□□ 0.86
CDX2Q99626 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC20.44■□□□□ 0.86
CDX2Q99626 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
CDX2Q99626 TLE1-202ENST00000376484 666 ntTSL 3 BASIC20.44■□□□□ 0.86
CDX2Q99626 MIR564-202ENST00000385049 94 ntBASIC20.44■□□□□ 0.86
CDX2Q99626 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC20.44■□□□□ 0.86
CDX2Q99626 PMS2P2-201ENST00000425039 1128 ntBASIC20.44■□□□□ 0.86
CDX2Q99626 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
CDX2Q99626 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC20.44■□□□□ 0.86
CDX2Q99626 AC027796.2-201ENST00000575326 344 ntBASIC20.44■□□□□ 0.86
CDX2Q99626 WDR6-223ENST00000627177 207 ntTSL 2 BASIC20.44■□□□□ 0.86
CDX2Q99626 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CDX2Q99626 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC20.44■□□□□ 0.86
CDX2Q99626 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC20.44■□□□□ 0.86
CDX2Q99626 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CDX2Q99626 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CDX2Q99626 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
CDX2Q99626 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CDX2Q99626 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
CDX2Q99626 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC20.44■□□□□ 0.86
CDX2Q99626 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
CDX2Q99626 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC20.43■□□□□ 0.86
CDX2Q99626 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CDX2Q99626 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CDX2Q99626 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CDX2Q99626 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
CDX2Q99626 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CDX2Q99626 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CDX2Q99626 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
CDX2Q99626 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC20.43■□□□□ 0.86
CDX2Q99626 DYM-203ENST00000442713 2147 ntTSL 2 BASIC20.43■□□□□ 0.86
CDX2Q99626 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC20.43■□□□□ 0.86
CDX2Q99626 TERC-201ENST00000602385 541 ntBASIC20.43■□□□□ 0.86
CDX2Q99626 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC20.43■□□□□ 0.86
CDX2Q99626 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
CDX2Q99626 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CDX2Q99626 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC20.43■□□□□ 0.86
CDX2Q99626 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
CDX2Q99626 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CDX2Q99626 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CDX2Q99626 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
CDX2Q99626 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CDX2Q99626 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CDX2Q99626 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC20.42■□□□□ 0.86
CDX2Q99626 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
CDX2Q99626 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC20.42■□□□□ 0.86
CDX2Q99626 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CDX2Q99626 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CDX2Q99626 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CDX2Q99626 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
CDX2Q99626 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC20.42■□□□□ 0.86
CDX2Q99626 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC20.42■□□□□ 0.86
CDX2Q99626 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC20.42■□□□□ 0.86
CDX2Q99626 AC104819.1-201ENST00000504587 486 ntBASIC20.42■□□□□ 0.86
CDX2Q99626 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC20.42■□□□□ 0.86
CDX2Q99626 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC20.42■□□□□ 0.86
CDX2Q99626 ABBA01031661.1-201ENST00000634362 1253 ntBASIC20.42■□□□□ 0.86
CDX2Q99626 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC20.42■□□□□ 0.86
CDX2Q99626 KRT16P6-202ENST00000425692 1426 ntBASIC20.42■□□□□ 0.86
CDX2Q99626 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC20.42■□□□□ 0.86
CDX2Q99626 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC20.42■□□□□ 0.86
CDX2Q99626 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CDX2Q99626 AKR1C7P-201ENST00000305623 895 ntBASIC20.41■□□□□ 0.86
CDX2Q99626 MOK-208ENST00000519058 917 ntTSL 2 BASIC20.41■□□□□ 0.86
CDX2Q99626 CFL1-212ENST00000531413 636 ntTSL 3 BASIC20.41■□□□□ 0.86
CDX2Q99626 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC20.41■□□□□ 0.86
CDX2Q99626 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC20.41■□□□□ 0.86
CDX2Q99626 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC20.41■□□□□ 0.86
CDX2Q99626 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
CDX2Q99626 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC20.41■□□□□ 0.86
CDX2Q99626 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
CDX2Q99626 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CDX2Q99626 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC20.4■□□□□ 0.86
CDX2Q99626 MIR940-201ENST00000401276 94 ntBASIC20.4■□□□□ 0.86
CDX2Q99626 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
CDX2Q99626 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC20.4■□□□□ 0.86
CDX2Q99626 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC20.4■□□□□ 0.86
CDX2Q99626 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC20.4■□□□□ 0.86
CDX2Q99626 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC20.4■□□□□ 0.86
CDX2Q99626 AC106730.1-201ENST00000566722 1090 ntBASIC20.4■□□□□ 0.86
CDX2Q99626 NAA38-203ENST00000575071 553 ntTSL 2 BASIC20.4■□□□□ 0.86
CDX2Q99626 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC20.4■□□□□ 0.86
CDX2Q99626 AC242852.2-201ENST00000615738 1807 ntBASIC20.4■□□□□ 0.86
CDX2Q99626 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
CDX2Q99626 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC20.4■□□□□ 0.86
CDX2Q99626 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
CDX2Q99626 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
CDX2Q99626 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC20.39■□□□□ 0.86
CDX2Q99626 GOLGA2P6-201ENST00000340929 2049 ntBASIC20.39■□□□□ 0.86
CDX2Q99626 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms