Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
VPS13AQ96RL7 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
VPS13AQ96RL7 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VPS13AQ96RL7 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VPS13AQ96RL7 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
VPS13AQ96RL7 CD37-204ENST00000535669 1674 ntTSL 2 BASIC19.31■□□□□ 0.68
VPS13AQ96RL7 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
VPS13AQ96RL7 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC19.31■□□□□ 0.68
VPS13AQ96RL7 AC131212.4-201ENST00000623606 975 ntBASIC19.31■□□□□ 0.68
VPS13AQ96RL7 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC19.31■□□□□ 0.68
VPS13AQ96RL7 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC19.31■□□□□ 0.68
VPS13AQ96RL7 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VPS13AQ96RL7 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VPS13AQ96RL7 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC19.31■□□□□ 0.68
VPS13AQ96RL7 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC19.31■□□□□ 0.68
VPS13AQ96RL7 BX640515.1-201ENST00000617215 977 ntBASIC19.31■□□□□ 0.68
VPS13AQ96RL7 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC19.31■□□□□ 0.68
VPS13AQ96RL7 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
VPS13AQ96RL7 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
VPS13AQ96RL7 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC19.3■□□□□ 0.68
VPS13AQ96RL7 HLA-A-209ENST00000638375 975 ntBASIC19.3■□□□□ 0.68
VPS13AQ96RL7 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VPS13AQ96RL7 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC19.3■□□□□ 0.68
VPS13AQ96RL7 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
VPS13AQ96RL7 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
VPS13AQ96RL7 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC19.3■□□□□ 0.68
VPS13AQ96RL7 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
VPS13AQ96RL7 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
VPS13AQ96RL7 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
VPS13AQ96RL7 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
VPS13AQ96RL7 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC19.3■□□□□ 0.68
VPS13AQ96RL7 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VPS13AQ96RL7 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VPS13AQ96RL7 KRT18P31-201ENST00000506277 1292 ntBASIC19.3■□□□□ 0.68
VPS13AQ96RL7 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC19.3■□□□□ 0.68
VPS13AQ96RL7 AC117500.6-201ENST00000624871 588 ntBASIC19.3■□□□□ 0.68
VPS13AQ96RL7 KRT8P41-201ENST00000533985 1514 ntBASIC19.3■□□□□ 0.68
VPS13AQ96RL7 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC19.29■□□□□ 0.68
VPS13AQ96RL7 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
VPS13AQ96RL7 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
VPS13AQ96RL7 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC19.29■□□□□ 0.68
VPS13AQ96RL7 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
VPS13AQ96RL7 AC233723.2-201ENST00000623798 2106 ntBASIC19.29■□□□□ 0.68
VPS13AQ96RL7 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VPS13AQ96RL7 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VPS13AQ96RL7 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC19.29■□□□□ 0.68
VPS13AQ96RL7 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
VPS13AQ96RL7 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
VPS13AQ96RL7 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
VPS13AQ96RL7 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
VPS13AQ96RL7 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
VPS13AQ96RL7 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
VPS13AQ96RL7 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VPS13AQ96RL7 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VPS13AQ96RL7 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VPS13AQ96RL7 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VPS13AQ96RL7 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
VPS13AQ96RL7 COX10-202ENST00000429152 875 ntTSL 2 BASIC19.29■□□□□ 0.68
VPS13AQ96RL7 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
VPS13AQ96RL7 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC19.29■□□□□ 0.68
VPS13AQ96RL7 PENK-208ENST00000523051 772 ntTSL 5 BASIC19.29■□□□□ 0.68
VPS13AQ96RL7 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VPS13AQ96RL7 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC19.29■□□□□ 0.68
VPS13AQ96RL7 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
VPS13AQ96RL7 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
VPS13AQ96RL7 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC19.28■□□□□ 0.68
VPS13AQ96RL7 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
VPS13AQ96RL7 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC19.28■□□□□ 0.68
VPS13AQ96RL7 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
VPS13AQ96RL7 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
VPS13AQ96RL7 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
VPS13AQ96RL7 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
VPS13AQ96RL7 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
VPS13AQ96RL7 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC19.28■□□□□ 0.68
VPS13AQ96RL7 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
VPS13AQ96RL7 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC19.28■□□□□ 0.68
VPS13AQ96RL7 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
VPS13AQ96RL7 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
VPS13AQ96RL7 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
VPS13AQ96RL7 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
VPS13AQ96RL7 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC19.28■□□□□ 0.68
VPS13AQ96RL7 AC004870.1-201ENST00000315132 882 ntBASIC19.28■□□□□ 0.68
VPS13AQ96RL7 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
VPS13AQ96RL7 AC012615.1-201ENST00000565797 1299 ntBASIC19.28■□□□□ 0.68
VPS13AQ96RL7 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
VPS13AQ96RL7 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
VPS13AQ96RL7 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
VPS13AQ96RL7 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
VPS13AQ96RL7 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
VPS13AQ96RL7 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
VPS13AQ96RL7 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
VPS13AQ96RL7 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
VPS13AQ96RL7 SLC25A1P1-201ENST00000528351 927 ntBASIC19.27■□□□□ 0.68
VPS13AQ96RL7 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
VPS13AQ96RL7 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
VPS13AQ96RL7 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
VPS13AQ96RL7 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
VPS13AQ96RL7 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
VPS13AQ96RL7 STK25-234ENST00000535007 2459 ntTSL 2 BASIC19.27■□□□□ 0.68
VPS13AQ96RL7 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC19.27■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms