Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC19.34■□□□□ 0.69
VPS35Q96QK1 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VPS35Q96QK1 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC19.34■□□□□ 0.69
VPS35Q96QK1 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VPS35Q96QK1 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
VPS35Q96QK1 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC19.34■□□□□ 0.69
VPS35Q96QK1 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
VPS35Q96QK1 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC19.34■□□□□ 0.69
VPS35Q96QK1 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
VPS35Q96QK1 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
VPS35Q96QK1 AC008550.1-201ENST00000511500 884 ntBASIC19.34■□□□□ 0.69
VPS35Q96QK1 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC19.34■□□□□ 0.69
VPS35Q96QK1 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC19.34■□□□□ 0.69
VPS35Q96QK1 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC19.34■□□□□ 0.69
VPS35Q96QK1 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
VPS35Q96QK1 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
VPS35Q96QK1 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
VPS35Q96QK1 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
VPS35Q96QK1 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
VPS35Q96QK1 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC19.34■□□□□ 0.69
VPS35Q96QK1 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC19.34■□□□□ 0.69
VPS35Q96QK1 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC19.33■□□□□ 0.69
VPS35Q96QK1 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC19.33■□□□□ 0.69
VPS35Q96QK1 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
VPS35Q96QK1 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
VPS35Q96QK1 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC19.33■□□□□ 0.69
VPS35Q96QK1 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.69
VPS35Q96QK1 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.69
VPS35Q96QK1 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC19.33■□□□□ 0.69
VPS35Q96QK1 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC19.33■□□□□ 0.69
VPS35Q96QK1 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
VPS35Q96QK1 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
VPS35Q96QK1 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
VPS35Q96QK1 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
VPS35Q96QK1 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
VPS35Q96QK1 RPS2P55-201ENST00000397318 883 ntBASIC19.33■□□□□ 0.68
VPS35Q96QK1 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC19.33■□□□□ 0.68
VPS35Q96QK1 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
VPS35Q96QK1 AC107956.1-201ENST00000494359 873 ntBASIC19.33■□□□□ 0.68
VPS35Q96QK1 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC19.33■□□□□ 0.68
VPS35Q96QK1 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
VPS35Q96QK1 AC233702.5-201ENST00000584107 538 ntBASIC19.33■□□□□ 0.68
VPS35Q96QK1 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
VPS35Q96QK1 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
VPS35Q96QK1 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
VPS35Q96QK1 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
VPS35Q96QK1 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
VPS35Q96QK1 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
VPS35Q96QK1 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VPS35Q96QK1 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
VPS35Q96QK1 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC19.32■□□□□ 0.68
VPS35Q96QK1 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VPS35Q96QK1 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC19.32■□□□□ 0.68
VPS35Q96QK1 MIR718-201ENST00000390190 70 ntBASIC19.32■□□□□ 0.68
VPS35Q96QK1 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC19.32■□□□□ 0.68
VPS35Q96QK1 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC19.32■□□□□ 0.68
VPS35Q96QK1 AF186192.3-201ENST00000583427 947 ntBASIC19.32■□□□□ 0.68
VPS35Q96QK1 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
VPS35Q96QK1 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC19.32■□□□□ 0.68
VPS35Q96QK1 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC19.32■□□□□ 0.68
VPS35Q96QK1 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
VPS35Q96QK1 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
VPS35Q96QK1 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
VPS35Q96QK1 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC19.31■□□□□ 0.68
VPS35Q96QK1 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC19.31■□□□□ 0.68
VPS35Q96QK1 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC19.31■□□□□ 0.68
VPS35Q96QK1 NIFKP9-201ENST00000419265 221 ntBASIC19.31■□□□□ 0.68
VPS35Q96QK1 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
VPS35Q96QK1 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
VPS35Q96QK1 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
VPS35Q96QK1 FDX2-207ENST00000494368 584 ntTSL 4 BASIC19.31■□□□□ 0.68
VPS35Q96QK1 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC19.31■□□□□ 0.68
VPS35Q96QK1 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
VPS35Q96QK1 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC19.31■□□□□ 0.68
VPS35Q96QK1 DET1-205ENST00000558413 583 ntTSL 4 BASIC19.31■□□□□ 0.68
VPS35Q96QK1 AC066615.1-201ENST00000640911 628 ntBASIC19.31■□□□□ 0.68
VPS35Q96QK1 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
VPS35Q96QK1 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC19.31■□□□□ 0.68
VPS35Q96QK1 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC19.31■□□□□ 0.68
VPS35Q96QK1 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VPS35Q96QK1 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VPS35Q96QK1 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
VPS35Q96QK1 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VPS35Q96QK1 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VPS35Q96QK1 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VPS35Q96QK1 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
VPS35Q96QK1 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
VPS35Q96QK1 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC19.31■□□□□ 0.68
VPS35Q96QK1 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
VPS35Q96QK1 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VPS35Q96QK1 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
VPS35Q96QK1 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VPS35Q96QK1 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC19.3■□□□□ 0.68
VPS35Q96QK1 AC125437.2-201ENST00000625180 2167 ntBASIC19.3■□□□□ 0.68
VPS35Q96QK1 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VPS35Q96QK1 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
VPS35Q96QK1 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC19.3■□□□□ 0.68
VPS35Q96QK1 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
VPS35Q96QK1 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
VPS35Q96QK1 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms