Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PTCHD1Q96NR3 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PTCHD1Q96NR3 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
PTCHD1Q96NR3 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC18.36■□□□□ 0.53
PTCHD1Q96NR3 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PTCHD1Q96NR3 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC18.36■□□□□ 0.53
PTCHD1Q96NR3 AL353807.1-201ENST00000427475 662 ntBASIC18.36■□□□□ 0.53
PTCHD1Q96NR3 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC18.36■□□□□ 0.53
PTCHD1Q96NR3 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
PTCHD1Q96NR3 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC18.36■□□□□ 0.53
PTCHD1Q96NR3 AP002982.1-201ENST00000492365 877 ntBASIC18.36■□□□□ 0.53
PTCHD1Q96NR3 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC18.36■□□□□ 0.53
PTCHD1Q96NR3 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
PTCHD1Q96NR3 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC18.36■□□□□ 0.53
PTCHD1Q96NR3 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
PTCHD1Q96NR3 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
PTCHD1Q96NR3 AC233702.5-201ENST00000584107 538 ntBASIC18.36■□□□□ 0.53
PTCHD1Q96NR3 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
PTCHD1Q96NR3 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
PTCHD1Q96NR3 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC18.36■□□□□ 0.53
PTCHD1Q96NR3 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
PTCHD1Q96NR3 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC18.36■□□□□ 0.53
PTCHD1Q96NR3 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
PTCHD1Q96NR3 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC18.35■□□□□ 0.53
PTCHD1Q96NR3 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PTCHD1Q96NR3 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
PTCHD1Q96NR3 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
PTCHD1Q96NR3 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC18.35■□□□□ 0.53
PTCHD1Q96NR3 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC18.35■□□□□ 0.53
PTCHD1Q96NR3 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC18.35■□□□□ 0.53
PTCHD1Q96NR3 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
PTCHD1Q96NR3 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PTCHD1Q96NR3 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.35■□□□□ 0.53
PTCHD1Q96NR3 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
PTCHD1Q96NR3 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC18.35■□□□□ 0.53
PTCHD1Q96NR3 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.35■□□□□ 0.53
PTCHD1Q96NR3 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
PTCHD1Q96NR3 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.35■□□□□ 0.53
PTCHD1Q96NR3 AF186192.3-201ENST00000583427 947 ntBASIC18.35■□□□□ 0.53
PTCHD1Q96NR3 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC18.35■□□□□ 0.53
PTCHD1Q96NR3 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC18.35■□□□□ 0.53
PTCHD1Q96NR3 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
PTCHD1Q96NR3 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
PTCHD1Q96NR3 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
PTCHD1Q96NR3 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC18.35■□□□□ 0.53
PTCHD1Q96NR3 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
PTCHD1Q96NR3 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
PTCHD1Q96NR3 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PTCHD1Q96NR3 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
PTCHD1Q96NR3 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC18.34■□□□□ 0.53
PTCHD1Q96NR3 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC18.34■□□□□ 0.53
PTCHD1Q96NR3 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
PTCHD1Q96NR3 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PTCHD1Q96NR3 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC18.34■□□□□ 0.53
PTCHD1Q96NR3 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC18.34■□□□□ 0.53
PTCHD1Q96NR3 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC18.34■□□□□ 0.53
PTCHD1Q96NR3 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC18.34■□□□□ 0.53
PTCHD1Q96NR3 MDFI-202ENST00000373050 809 ntTSL 2 BASIC18.34■□□□□ 0.53
PTCHD1Q96NR3 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC18.34■□□□□ 0.53
PTCHD1Q96NR3 REXO2-216ENST00000544196 452 ntTSL 3 BASIC18.34■□□□□ 0.53
PTCHD1Q96NR3 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC18.34■□□□□ 0.53
PTCHD1Q96NR3 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PTCHD1Q96NR3 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PTCHD1Q96NR3 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC18.34■□□□□ 0.53
PTCHD1Q96NR3 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PTCHD1Q96NR3 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
PTCHD1Q96NR3 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PTCHD1Q96NR3 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
PTCHD1Q96NR3 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC18.34■□□□□ 0.53
PTCHD1Q96NR3 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC18.34■□□□□ 0.53
PTCHD1Q96NR3 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
PTCHD1Q96NR3 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PTCHD1Q96NR3 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
PTCHD1Q96NR3 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
PTCHD1Q96NR3 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
PTCHD1Q96NR3 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
PTCHD1Q96NR3 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
PTCHD1Q96NR3 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
PTCHD1Q96NR3 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.53
PTCHD1Q96NR3 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.53
PTCHD1Q96NR3 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC18.33■□□□□ 0.53
PTCHD1Q96NR3 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
PTCHD1Q96NR3 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC18.33■□□□□ 0.53
PTCHD1Q96NR3 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC18.33■□□□□ 0.52
PTCHD1Q96NR3 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
PTCHD1Q96NR3 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
PTCHD1Q96NR3 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
PTCHD1Q96NR3 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC18.33■□□□□ 0.52
PTCHD1Q96NR3 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
PTCHD1Q96NR3 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
PTCHD1Q96NR3 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
PTCHD1Q96NR3 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC18.33■□□□□ 0.52
PTCHD1Q96NR3 C1QL1P1-201ENST00000568105 661 ntBASIC18.33■□□□□ 0.52
PTCHD1Q96NR3 RPS15-203ENST00000586096 570 ntTSL 2 BASIC18.33■□□□□ 0.52
PTCHD1Q96NR3 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC18.33■□□□□ 0.52
PTCHD1Q96NR3 AL049637.2-201ENST00000641778 930 ntBASIC18.33■□□□□ 0.52
PTCHD1Q96NR3 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
PTCHD1Q96NR3 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC18.33■□□□□ 0.52
PTCHD1Q96NR3 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
PTCHD1Q96NR3 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms