Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
CLIP3Q96DZ5 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC18.75■□□□□ 0.59
CLIP3Q96DZ5 LINC01006-201ENST00000333319 2292 ntBASIC18.75■□□□□ 0.59
CLIP3Q96DZ5 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC18.75■□□□□ 0.59
CLIP3Q96DZ5 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC18.75■□□□□ 0.59
CLIP3Q96DZ5 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
CLIP3Q96DZ5 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CLIP3Q96DZ5 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
CLIP3Q96DZ5 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC18.74■□□□□ 0.59
CLIP3Q96DZ5 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CLIP3Q96DZ5 AC020907.5-201ENST00000624372 1936 ntBASIC18.74■□□□□ 0.59
CLIP3Q96DZ5 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
CLIP3Q96DZ5 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CLIP3Q96DZ5 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CLIP3Q96DZ5 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
CLIP3Q96DZ5 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
CLIP3Q96DZ5 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CLIP3Q96DZ5 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CLIP3Q96DZ5 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
CLIP3Q96DZ5 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CLIP3Q96DZ5 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC18.74■□□□□ 0.59
CLIP3Q96DZ5 FDX2-207ENST00000494368 584 ntTSL 4 BASIC18.74■□□□□ 0.59
CLIP3Q96DZ5 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC18.74■□□□□ 0.59
CLIP3Q96DZ5 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC18.74■□□□□ 0.59
CLIP3Q96DZ5 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CLIP3Q96DZ5 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CLIP3Q96DZ5 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC18.74■□□□□ 0.59
CLIP3Q96DZ5 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CLIP3Q96DZ5 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
CLIP3Q96DZ5 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
CLIP3Q96DZ5 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CLIP3Q96DZ5 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC18.73■□□□□ 0.59
CLIP3Q96DZ5 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CLIP3Q96DZ5 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC18.73■□□□□ 0.59
CLIP3Q96DZ5 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
CLIP3Q96DZ5 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CLIP3Q96DZ5 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
CLIP3Q96DZ5 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CLIP3Q96DZ5 ECEL1P3-201ENST00000427961 737 ntBASIC18.73■□□□□ 0.59
CLIP3Q96DZ5 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC18.73■□□□□ 0.59
CLIP3Q96DZ5 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC18.73■□□□□ 0.59
CLIP3Q96DZ5 AL355075.4-201ENST00000554988 638 ntBASIC18.73■□□□□ 0.59
CLIP3Q96DZ5 AP003071.4-201ENST00000562276 1284 ntBASIC18.73■□□□□ 0.59
CLIP3Q96DZ5 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC18.73■□□□□ 0.59
CLIP3Q96DZ5 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC18.73■□□□□ 0.59
CLIP3Q96DZ5 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC18.73■□□□□ 0.59
CLIP3Q96DZ5 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC18.73■□□□□ 0.59
CLIP3Q96DZ5 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CLIP3Q96DZ5 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
CLIP3Q96DZ5 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
CLIP3Q96DZ5 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC18.73■□□□□ 0.59
CLIP3Q96DZ5 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
CLIP3Q96DZ5 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CLIP3Q96DZ5 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC18.72■□□□□ 0.59
CLIP3Q96DZ5 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CLIP3Q96DZ5 AC116351.2-201ENST00000606540 1585 ntBASIC18.72■□□□□ 0.59
CLIP3Q96DZ5 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
CLIP3Q96DZ5 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC18.72■□□□□ 0.59
CLIP3Q96DZ5 AC018553.1-201ENST00000616682 1458 ntBASIC18.72■□□□□ 0.59
CLIP3Q96DZ5 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC18.72■□□□□ 0.59
CLIP3Q96DZ5 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC18.72■□□□□ 0.59
CLIP3Q96DZ5 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CLIP3Q96DZ5 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CLIP3Q96DZ5 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CLIP3Q96DZ5 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CLIP3Q96DZ5 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
CLIP3Q96DZ5 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CLIP3Q96DZ5 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CLIP3Q96DZ5 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
CLIP3Q96DZ5 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC18.72■□□□□ 0.59
CLIP3Q96DZ5 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC18.72■□□□□ 0.59
CLIP3Q96DZ5 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CLIP3Q96DZ5 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC18.72■□□□□ 0.59
CLIP3Q96DZ5 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC18.72■□□□□ 0.59
CLIP3Q96DZ5 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC18.72■□□□□ 0.59
CLIP3Q96DZ5 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
CLIP3Q96DZ5 DECR2-212ENST00000627716 352 ntTSL 2 BASIC18.72■□□□□ 0.59
CLIP3Q96DZ5 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
CLIP3Q96DZ5 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
CLIP3Q96DZ5 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CLIP3Q96DZ5 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
CLIP3Q96DZ5 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC18.72■□□□□ 0.59
CLIP3Q96DZ5 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC18.72■□□□□ 0.59
CLIP3Q96DZ5 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC18.72■□□□□ 0.59
CLIP3Q96DZ5 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC18.72■□□□□ 0.59
CLIP3Q96DZ5 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLIP3Q96DZ5 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC18.71■□□□□ 0.59
CLIP3Q96DZ5 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLIP3Q96DZ5 STK25-204ENST00000405585 1643 ntTSL 2 BASIC18.71■□□□□ 0.59
CLIP3Q96DZ5 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLIP3Q96DZ5 PHGDH-210ENST00000641115 1638 ntBASIC18.71■□□□□ 0.59
CLIP3Q96DZ5 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLIP3Q96DZ5 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CLIP3Q96DZ5 DET1-207ENST00000564406 2315 ntTSL 2 BASIC18.71■□□□□ 0.59
CLIP3Q96DZ5 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
CLIP3Q96DZ5 AC211429.1-201ENST00000415277 523 ntBASIC18.71■□□□□ 0.59
CLIP3Q96DZ5 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC18.71■□□□□ 0.59
CLIP3Q96DZ5 RPS20-210ENST00000523936 899 ntTSL 2 BASIC18.71■□□□□ 0.59
CLIP3Q96DZ5 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC18.71■□□□□ 0.59
CLIP3Q96DZ5 GRAP-204ENST00000573099 846 ntTSL 3 BASIC18.71■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 14.5 ms