Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC28AQ8IWP9 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC16.25■□□□□ 0.19
CCDC28AQ8IWP9 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC28AQ8IWP9 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC28AQ8IWP9 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
CCDC28AQ8IWP9 CREM-229ENST00000474362 1030 ntTSL 2 BASIC16.25■□□□□ 0.19
CCDC28AQ8IWP9 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC16.25■□□□□ 0.19
CCDC28AQ8IWP9 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC16.25■□□□□ 0.19
CCDC28AQ8IWP9 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC16.25■□□□□ 0.19
CCDC28AQ8IWP9 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC16.25■□□□□ 0.19
CCDC28AQ8IWP9 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC28AQ8IWP9 VGF-203ENST00000611537 1622 ntTSL 5 BASIC16.25■□□□□ 0.19
CCDC28AQ8IWP9 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
CCDC28AQ8IWP9 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC28AQ8IWP9 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
CCDC28AQ8IWP9 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC28AQ8IWP9 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
CCDC28AQ8IWP9 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC28AQ8IWP9 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC28AQ8IWP9 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC28AQ8IWP9 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC16.25■□□□□ 0.19
CCDC28AQ8IWP9 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CCDC28AQ8IWP9 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC28AQ8IWP9 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC28AQ8IWP9 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC16.24■□□□□ 0.19
CCDC28AQ8IWP9 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC28AQ8IWP9 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC28AQ8IWP9 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC28AQ8IWP9 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC28AQ8IWP9 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC28AQ8IWP9 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC28AQ8IWP9 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC28AQ8IWP9 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC16.24■□□□□ 0.19
CCDC28AQ8IWP9 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC28AQ8IWP9 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC28AQ8IWP9 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
CCDC28AQ8IWP9 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC16.24■□□□□ 0.19
CCDC28AQ8IWP9 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC16.24■□□□□ 0.19
CCDC28AQ8IWP9 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC28AQ8IWP9 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC28AQ8IWP9 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC28AQ8IWP9 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC28AQ8IWP9 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC28AQ8IWP9 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
CCDC28AQ8IWP9 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC16.24■□□□□ 0.19
CCDC28AQ8IWP9 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC28AQ8IWP9 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC28AQ8IWP9 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC28AQ8IWP9 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
CCDC28AQ8IWP9 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC28AQ8IWP9 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC28AQ8IWP9 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC28AQ8IWP9 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC28AQ8IWP9 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
CCDC28AQ8IWP9 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC28AQ8IWP9 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
CCDC28AQ8IWP9 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC28AQ8IWP9 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC28AQ8IWP9 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
CCDC28AQ8IWP9 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC16.23■□□□□ 0.19
CCDC28AQ8IWP9 AK3-203ENST00000447596 705 ntTSL 2 BASIC16.23■□□□□ 0.19
CCDC28AQ8IWP9 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC16.23■□□□□ 0.19
CCDC28AQ8IWP9 TRIR-205ENST00000592273 783 ntTSL 3 BASIC16.23■□□□□ 0.19
CCDC28AQ8IWP9 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC16.23■□□□□ 0.19
CCDC28AQ8IWP9 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC28AQ8IWP9 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC28AQ8IWP9 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC16.23■□□□□ 0.19
CCDC28AQ8IWP9 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC28AQ8IWP9 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC16.23■□□□□ 0.19
CCDC28AQ8IWP9 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC28AQ8IWP9 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC28AQ8IWP9 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC16.23■□□□□ 0.19
CCDC28AQ8IWP9 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC28AQ8IWP9 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CCDC28AQ8IWP9 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
CCDC28AQ8IWP9 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC16.23■□□□□ 0.19
CCDC28AQ8IWP9 BOC-212ENST00000485230 2173 ntTSL 2 BASIC16.23■□□□□ 0.19
CCDC28AQ8IWP9 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC16.23■□□□□ 0.19
CCDC28AQ8IWP9 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
CCDC28AQ8IWP9 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC16.22■□□□□ 0.19
CCDC28AQ8IWP9 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC28AQ8IWP9 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC28AQ8IWP9 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC28AQ8IWP9 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
CCDC28AQ8IWP9 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC28AQ8IWP9 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
CCDC28AQ8IWP9 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC16.22■□□□□ 0.19
CCDC28AQ8IWP9 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC16.22■□□□□ 0.19
CCDC28AQ8IWP9 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
CCDC28AQ8IWP9 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC28AQ8IWP9 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
CCDC28AQ8IWP9 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC28AQ8IWP9 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
CCDC28AQ8IWP9 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC28AQ8IWP9 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC28AQ8IWP9 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC28AQ8IWP9 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC28AQ8IWP9 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC28AQ8IWP9 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
CCDC28AQ8IWP9 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC16.22■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms