Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
EPHB3P54753 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC20.35■□□□□ 0.85
EPHB3P54753 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC20.35■□□□□ 0.85
EPHB3P54753 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
EPHB3P54753 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
EPHB3P54753 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC20.35■□□□□ 0.85
EPHB3P54753 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
EPHB3P54753 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
EPHB3P54753 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC20.35■□□□□ 0.85
EPHB3P54753 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
EPHB3P54753 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
EPHB3P54753 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
EPHB3P54753 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
EPHB3P54753 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
EPHB3P54753 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC20.34■□□□□ 0.85
EPHB3P54753 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
EPHB3P54753 INGX-201ENST00000359239 846 ntBASIC20.34■□□□□ 0.85
EPHB3P54753 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
EPHB3P54753 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC20.34■□□□□ 0.85
EPHB3P54753 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC20.34■□□□□ 0.85
EPHB3P54753 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC20.34■□□□□ 0.85
EPHB3P54753 NT5C-211ENST00000582170 653 ntTSL 3 BASIC20.34■□□□□ 0.85
EPHB3P54753 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC20.34■□□□□ 0.85
EPHB3P54753 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
EPHB3P54753 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
EPHB3P54753 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
EPHB3P54753 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
EPHB3P54753 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
EPHB3P54753 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
EPHB3P54753 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
EPHB3P54753 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
EPHB3P54753 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
EPHB3P54753 AL391422.3-201ENST00000603791 2761 ntBASIC20.33■□□□□ 0.85
EPHB3P54753 LGALS8-AS1-201ENST00000487567 1457 ntBASIC20.33■□□□□ 0.85
EPHB3P54753 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC20.33■□□□□ 0.85
EPHB3P54753 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC20.33■□□□□ 0.85
EPHB3P54753 NME3-204ENST00000563498 920 ntTSL 2 BASIC20.33■□□□□ 0.85
EPHB3P54753 RMI2-205ENST00000576027 818 ntTSL 2 BASIC20.33■□□□□ 0.85
EPHB3P54753 FAM87A-204ENST00000613235 858 ntBASIC20.33■□□□□ 0.85
EPHB3P54753 LINC01465-201ENST00000408887 1940 ntBASIC20.33■□□□□ 0.84
EPHB3P54753 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.84
EPHB3P54753 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.84
EPHB3P54753 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC20.33■□□□□ 0.84
EPHB3P54753 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
EPHB3P54753 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC20.33■□□□□ 0.84
EPHB3P54753 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC20.32■□□□□ 0.84
EPHB3P54753 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
EPHB3P54753 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
EPHB3P54753 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
EPHB3P54753 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
EPHB3P54753 HMGA1P5-201ENST00000412453 271 ntBASIC20.32■□□□□ 0.84
EPHB3P54753 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC20.32■□□□□ 0.84
EPHB3P54753 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC20.32■□□□□ 0.84
EPHB3P54753 RBM42-202ENST00000586618 771 ntTSL 3 BASIC20.32■□□□□ 0.84
EPHB3P54753 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
EPHB3P54753 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
EPHB3P54753 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC20.32■□□□□ 0.84
EPHB3P54753 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
EPHB3P54753 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
EPHB3P54753 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
EPHB3P54753 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
EPHB3P54753 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
EPHB3P54753 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC20.31■□□□□ 0.84
EPHB3P54753 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
EPHB3P54753 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
EPHB3P54753 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
EPHB3P54753 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
EPHB3P54753 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
EPHB3P54753 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
EPHB3P54753 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
EPHB3P54753 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
EPHB3P54753 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
EPHB3P54753 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
EPHB3P54753 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
EPHB3P54753 AC104076.2-201ENST00000448912 469 ntBASIC20.31■□□□□ 0.84
EPHB3P54753 DUX4L26-201ENST00000489078 1255 ntBASIC20.31■□□□□ 0.84
EPHB3P54753 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC20.31■□□□□ 0.84
EPHB3P54753 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
EPHB3P54753 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
EPHB3P54753 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
EPHB3P54753 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
EPHB3P54753 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
EPHB3P54753 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC20.31■□□□□ 0.84
EPHB3P54753 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
EPHB3P54753 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
EPHB3P54753 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
EPHB3P54753 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC20.3■□□□□ 0.84
EPHB3P54753 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC20.3■□□□□ 0.84
EPHB3P54753 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
EPHB3P54753 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC20.3■□□□□ 0.84
EPHB3P54753 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
EPHB3P54753 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
EPHB3P54753 GPX4-207ENST00000589115 812 ntTSL 2 BASIC20.3■□□□□ 0.84
EPHB3P54753 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
EPHB3P54753 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC20.3■□□□□ 0.84
EPHB3P54753 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
EPHB3P54753 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC20.3■□□□□ 0.84
EPHB3P54753 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
EPHB3P54753 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC20.3■□□□□ 0.84
EPHB3P54753 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms