Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC21.43■■□□□ 1.02
CLCN3P51790 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.02
CLCN3P51790 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CLCN3P51790 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CLCN3P51790 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
CLCN3P51790 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CLCN3P51790 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CLCN3P51790 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CLCN3P51790 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC21.42■■□□□ 1.02
CLCN3P51790 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
CLCN3P51790 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
CLCN3P51790 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
CLCN3P51790 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
CLCN3P51790 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
CLCN3P51790 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC21.42■■□□□ 1.02
CLCN3P51790 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC21.42■■□□□ 1.02
CLCN3P51790 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC21.42■■□□□ 1.02
CLCN3P51790 CRAT-202ENST00000393384 973 ntTSL 2 BASIC21.42■■□□□ 1.02
CLCN3P51790 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC21.42■■□□□ 1.02
CLCN3P51790 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC21.42■■□□□ 1.02
CLCN3P51790 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC21.42■■□□□ 1.02
CLCN3P51790 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC21.42■■□□□ 1.02
CLCN3P51790 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC21.42■■□□□ 1.02
CLCN3P51790 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC21.42■■□□□ 1.02
CLCN3P51790 FAM207BP-201ENST00000447172 505 ntBASIC21.42■■□□□ 1.02
CLCN3P51790 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC21.42■■□□□ 1.02
CLCN3P51790 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC21.42■■□□□ 1.02
CLCN3P51790 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC21.42■■□□□ 1.02
CLCN3P51790 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC21.42■■□□□ 1.02
CLCN3P51790 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC21.42■■□□□ 1.02
CLCN3P51790 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
CLCN3P51790 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC21.42■■□□□ 1.02
CLCN3P51790 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC21.42■■□□□ 1.02
CLCN3P51790 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
CLCN3P51790 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC21.41■■□□□ 1.02
CLCN3P51790 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC21.41■■□□□ 1.02
CLCN3P51790 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
CLCN3P51790 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC21.41■■□□□ 1.02
CLCN3P51790 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
CLCN3P51790 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CLCN3P51790 KRT18P22-201ENST00000402024 1347 ntBASIC21.41■■□□□ 1.02
CLCN3P51790 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC21.41■■□□□ 1.02
CLCN3P51790 AC005521.1-201ENST00000393351 872 ntBASIC21.41■■□□□ 1.02
CLCN3P51790 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC21.41■■□□□ 1.02
CLCN3P51790 TMA16-209ENST00000513272 803 ntTSL 2 BASIC21.41■■□□□ 1.02
CLCN3P51790 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC21.41■■□□□ 1.02
CLCN3P51790 TK2-213ENST00000563369 882 ntTSL 5 BASIC21.41■■□□□ 1.02
CLCN3P51790 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC21.41■■□□□ 1.02
CLCN3P51790 AC010331.1-201ENST00000611423 582 ntBASIC21.41■■□□□ 1.02
CLCN3P51790 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
CLCN3P51790 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC21.41■■□□□ 1.02
CLCN3P51790 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC21.41■■□□□ 1.02
CLCN3P51790 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC21.41■■□□□ 1.02
CLCN3P51790 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
CLCN3P51790 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
CLCN3P51790 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC21.41■■□□□ 1.02
CLCN3P51790 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC21.41■■□□□ 1.02
CLCN3P51790 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC21.41■■□□□ 1.02
CLCN3P51790 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC21.41■■□□□ 1.02
CLCN3P51790 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CLCN3P51790 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC21.4■■□□□ 1.02
CLCN3P51790 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CLCN3P51790 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
CLCN3P51790 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC21.4■■□□□ 1.02
CLCN3P51790 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CLCN3P51790 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CLCN3P51790 TMPOP1-202ENST00000424642 1267 ntBASIC21.4■■□□□ 1.02
CLCN3P51790 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC21.4■■□□□ 1.02
CLCN3P51790 MFAP1P1-201ENST00000442257 1255 ntBASIC21.4■■□□□ 1.02
CLCN3P51790 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC21.4■■□□□ 1.02
CLCN3P51790 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
CLCN3P51790 C2orf69P3-201ENST00000565542 1120 ntBASIC21.4■■□□□ 1.02
CLCN3P51790 P4HB-223ENST00000576390 439 ntTSL 4 BASIC21.4■■□□□ 1.02
CLCN3P51790 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
CLCN3P51790 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CLCN3P51790 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CLCN3P51790 LBX2-AS1-202ENST00000603175 2083 ntBASIC21.4■■□□□ 1.02
CLCN3P51790 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC21.39■■□□□ 1.02
CLCN3P51790 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC21.39■■□□□ 1.02
CLCN3P51790 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC21.39■■□□□ 1.02
CLCN3P51790 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC21.39■■□□□ 1.02
CLCN3P51790 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
CLCN3P51790 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
CLCN3P51790 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
CLCN3P51790 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.01
CLCN3P51790 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.01
CLCN3P51790 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.01
CLCN3P51790 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC21.39■■□□□ 1.01
CLCN3P51790 KRT18P57-201ENST00000443599 1254 ntBASIC21.39■■□□□ 1.01
CLCN3P51790 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC21.39■■□□□ 1.01
CLCN3P51790 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC21.39■■□□□ 1.01
CLCN3P51790 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC21.39■■□□□ 1.01
CLCN3P51790 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.01
CLCN3P51790 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
CLCN3P51790 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
CLCN3P51790 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.01
CLCN3P51790 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
CLCN3P51790 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC21.39■■□□□ 1.01
CLCN3P51790 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
CLCN3P51790 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 62.1 ms