Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL6A3P12111 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC20.42■□□□□ 0.86
COL6A3P12111 AF238378.1-201ENST00000526806 358 ntBASIC20.42■□□□□ 0.86
COL6A3P12111 AC139887.3-201ENST00000568585 713 ntBASIC20.42■□□□□ 0.86
COL6A3P12111 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC20.42■□□□□ 0.86
COL6A3P12111 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL6A3P12111 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC20.42■□□□□ 0.86
COL6A3P12111 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC20.42■□□□□ 0.86
COL6A3P12111 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
COL6A3P12111 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
COL6A3P12111 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC20.42■□□□□ 0.86
COL6A3P12111 WDR6-223ENST00000627177 207 ntTSL 2 BASIC20.42■□□□□ 0.86
COL6A3P12111 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
COL6A3P12111 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
COL6A3P12111 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC20.41■□□□□ 0.86
COL6A3P12111 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
COL6A3P12111 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC20.41■□□□□ 0.86
COL6A3P12111 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
COL6A3P12111 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC20.41■□□□□ 0.86
COL6A3P12111 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC20.41■□□□□ 0.86
COL6A3P12111 KRT18P67-201ENST00000432816 1264 ntBASIC20.41■□□□□ 0.86
COL6A3P12111 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC20.41■□□□□ 0.86
COL6A3P12111 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC20.41■□□□□ 0.86
COL6A3P12111 AC116351.2-201ENST00000606540 1585 ntBASIC20.41■□□□□ 0.86
COL6A3P12111 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL6A3P12111 C9orf163-202ENST00000624034 2573 ntBASIC20.41■□□□□ 0.86
COL6A3P12111 TERT-206ENST00000508104 2486 ntTSL 5 BASIC20.41■□□□□ 0.86
COL6A3P12111 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
COL6A3P12111 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
COL6A3P12111 PTPA-216ENST00000432651 857 ntTSL 2 BASIC20.41■□□□□ 0.86
COL6A3P12111 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC20.41■□□□□ 0.86
COL6A3P12111 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
COL6A3P12111 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC20.41■□□□□ 0.86
COL6A3P12111 AC148477.8-201ENST00000624298 468 ntBASIC20.41■□□□□ 0.86
COL6A3P12111 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC20.41■□□□□ 0.86
COL6A3P12111 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
COL6A3P12111 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
COL6A3P12111 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL6A3P12111 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
COL6A3P12111 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC20.4■□□□□ 0.86
COL6A3P12111 DNAJB3-202ENST00000449667 1266 ntBASIC20.4■□□□□ 0.86
COL6A3P12111 TK1-205ENST00000590862 642 ntTSL 3 BASIC20.4■□□□□ 0.86
COL6A3P12111 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC20.4■□□□□ 0.86
COL6A3P12111 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL6A3P12111 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
COL6A3P12111 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL6A3P12111 MED22-202ENST00000371999 987 ntTSL 3 BASIC20.4■□□□□ 0.86
COL6A3P12111 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC20.4■□□□□ 0.86
COL6A3P12111 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC20.4■□□□□ 0.86
COL6A3P12111 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC20.4■□□□□ 0.86
COL6A3P12111 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
COL6A3P12111 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC20.4■□□□□ 0.86
COL6A3P12111 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
COL6A3P12111 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC20.4■□□□□ 0.86
COL6A3P12111 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC20.4■□□□□ 0.86
COL6A3P12111 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL6A3P12111 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC20.4■□□□□ 0.86
COL6A3P12111 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC20.4■□□□□ 0.86
COL6A3P12111 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL6A3P12111 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
COL6A3P12111 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
COL6A3P12111 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
COL6A3P12111 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
COL6A3P12111 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
COL6A3P12111 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
COL6A3P12111 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
COL6A3P12111 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC20.39■□□□□ 0.85
COL6A3P12111 LBH-203ENST00000404397 543 ntTSL 4 BASIC20.39■□□□□ 0.85
COL6A3P12111 LBH-204ENST00000406087 559 ntTSL 4 BASIC20.39■□□□□ 0.85
COL6A3P12111 AL031284.1-201ENST00000419297 478 ntBASIC20.39■□□□□ 0.85
COL6A3P12111 BET1L-206ENST00000486280 665 ntTSL 3 BASIC20.39■□□□□ 0.85
COL6A3P12111 TP73-AS1-207ENST00000624167 988 ntBASIC20.39■□□□□ 0.85
COL6A3P12111 HLA-A-209ENST00000638375 975 ntBASIC20.39■□□□□ 0.85
COL6A3P12111 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
COL6A3P12111 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC20.39■□□□□ 0.85
COL6A3P12111 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC20.39■□□□□ 0.85
COL6A3P12111 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC20.39■□□□□ 0.85
COL6A3P12111 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
COL6A3P12111 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
COL6A3P12111 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC20.39■□□□□ 0.85
COL6A3P12111 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC20.39■□□□□ 0.85
COL6A3P12111 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC20.39■□□□□ 0.85
COL6A3P12111 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
COL6A3P12111 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
COL6A3P12111 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC20.39■□□□□ 0.85
COL6A3P12111 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
COL6A3P12111 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
COL6A3P12111 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
COL6A3P12111 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
COL6A3P12111 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC20.38■□□□□ 0.85
COL6A3P12111 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC20.38■□□□□ 0.85
COL6A3P12111 TPM1-218ENST00000559281 851 ntTSL 5 BASIC20.38■□□□□ 0.85
COL6A3P12111 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL6A3P12111 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL6A3P12111 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC20.38■□□□□ 0.85
COL6A3P12111 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL6A3P12111 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
COL6A3P12111 CALM3-202ENST00000391918 702 ntTSL 2 BASIC20.38■□□□□ 0.85
COL6A3P12111 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC20.38■□□□□ 0.85
COL6A3P12111 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC20.38■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms