Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC19.06■□□□□ 0.64
VPS4BO75351 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC19.06■□□□□ 0.64
VPS4BO75351 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC19.06■□□□□ 0.64
VPS4BO75351 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC19.06■□□□□ 0.64
VPS4BO75351 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC19.06■□□□□ 0.64
VPS4BO75351 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC19.06■□□□□ 0.64
VPS4BO75351 BRWD1-AS2-201ENST00000603064 1028 ntBASIC19.06■□□□□ 0.64
VPS4BO75351 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC19.06■□□□□ 0.64
VPS4BO75351 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
VPS4BO75351 AL359736.2-201ENST00000621992 437 ntBASIC19.06■□□□□ 0.64
VPS4BO75351 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
VPS4BO75351 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
VPS4BO75351 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
VPS4BO75351 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC19.06■□□□□ 0.64
VPS4BO75351 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
VPS4BO75351 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC19.05■□□□□ 0.64
VPS4BO75351 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC19.05■□□□□ 0.64
VPS4BO75351 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
VPS4BO75351 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
VPS4BO75351 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC19.05■□□□□ 0.64
VPS4BO75351 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC19.05■□□□□ 0.64
VPS4BO75351 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
VPS4BO75351 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
VPS4BO75351 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
VPS4BO75351 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC19.05■□□□□ 0.64
VPS4BO75351 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC19.05■□□□□ 0.64
VPS4BO75351 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
VPS4BO75351 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
VPS4BO75351 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.05■□□□□ 0.64
VPS4BO75351 AC023632.3-201ENST00000521633 145 ntBASIC19.05■□□□□ 0.64
VPS4BO75351 MIR4497-201ENST00000583208 89 ntBASIC19.05■□□□□ 0.64
VPS4BO75351 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC19.05■□□□□ 0.64
VPS4BO75351 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC19.05■□□□□ 0.64
VPS4BO75351 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
VPS4BO75351 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
VPS4BO75351 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
VPS4BO75351 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
VPS4BO75351 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
VPS4BO75351 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
VPS4BO75351 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
VPS4BO75351 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
VPS4BO75351 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC19.05■□□□□ 0.64
VPS4BO75351 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
VPS4BO75351 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
VPS4BO75351 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
VPS4BO75351 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
VPS4BO75351 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
VPS4BO75351 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
VPS4BO75351 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
VPS4BO75351 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
VPS4BO75351 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
VPS4BO75351 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
VPS4BO75351 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
VPS4BO75351 FAM210CP-201ENST00000445714 574 ntBASIC19.04■□□□□ 0.64
VPS4BO75351 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC19.04■□□□□ 0.64
VPS4BO75351 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
VPS4BO75351 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC19.04■□□□□ 0.64
VPS4BO75351 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC19.04■□□□□ 0.64
VPS4BO75351 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC19.04■□□□□ 0.64
VPS4BO75351 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
VPS4BO75351 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC19.04■□□□□ 0.64
VPS4BO75351 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
VPS4BO75351 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
VPS4BO75351 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC19.04■□□□□ 0.64
VPS4BO75351 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
VPS4BO75351 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
VPS4BO75351 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
VPS4BO75351 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
VPS4BO75351 LINC01465-201ENST00000408887 1940 ntBASIC19.04■□□□□ 0.64
VPS4BO75351 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
VPS4BO75351 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
VPS4BO75351 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
VPS4BO75351 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC19.03■□□□□ 0.64
VPS4BO75351 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VPS4BO75351 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC19.03■□□□□ 0.64
VPS4BO75351 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC19.03■□□□□ 0.64
VPS4BO75351 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC19.03■□□□□ 0.64
VPS4BO75351 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC19.03■□□□□ 0.64
VPS4BO75351 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC19.03■□□□□ 0.64
VPS4BO75351 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VPS4BO75351 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC19.03■□□□□ 0.64
VPS4BO75351 GXYLT1P3-201ENST00000453058 1193 ntBASIC19.03■□□□□ 0.64
VPS4BO75351 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC19.03■□□□□ 0.64
VPS4BO75351 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC19.03■□□□□ 0.64
VPS4BO75351 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC19.03■□□□□ 0.64
VPS4BO75351 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
VPS4BO75351 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
VPS4BO75351 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC19.03■□□□□ 0.64
VPS4BO75351 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
VPS4BO75351 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
VPS4BO75351 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC19.03■□□□□ 0.64
VPS4BO75351 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
VPS4BO75351 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VPS4BO75351 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC19.03■□□□□ 0.64
VPS4BO75351 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC19.03■□□□□ 0.64
VPS4BO75351 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC19.03■□□□□ 0.64
VPS4BO75351 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
VPS4BO75351 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC19.02■□□□□ 0.64
VPS4BO75351 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
VPS4BO75351 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC19.02■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms