Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SHOX2O60902 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.71
SHOX2O60902 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
SHOX2O60902 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC19.52■□□□□ 0.71
SHOX2O60902 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.71
SHOX2O60902 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
SHOX2O60902 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SHOX2O60902 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SHOX2O60902 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC19.51■□□□□ 0.71
SHOX2O60902 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SHOX2O60902 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SHOX2O60902 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SHOX2O60902 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SHOX2O60902 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC19.51■□□□□ 0.71
SHOX2O60902 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SHOX2O60902 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
SHOX2O60902 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SHOX2O60902 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC19.51■□□□□ 0.71
SHOX2O60902 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC19.51■□□□□ 0.71
SHOX2O60902 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC19.51■□□□□ 0.71
SHOX2O60902 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC19.51■□□□□ 0.71
SHOX2O60902 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SHOX2O60902 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SHOX2O60902 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
SHOX2O60902 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
SHOX2O60902 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SHOX2O60902 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SHOX2O60902 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SHOX2O60902 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
SHOX2O60902 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SHOX2O60902 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
SHOX2O60902 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SHOX2O60902 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SHOX2O60902 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
SHOX2O60902 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC19.5■□□□□ 0.71
SHOX2O60902 PTMA-205ENST00000410064 814 ntTSL 2 BASIC19.5■□□□□ 0.71
SHOX2O60902 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC19.5■□□□□ 0.71
SHOX2O60902 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
SHOX2O60902 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC19.5■□□□□ 0.71
SHOX2O60902 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SHOX2O60902 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC19.5■□□□□ 0.71
SHOX2O60902 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
SHOX2O60902 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SHOX2O60902 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SHOX2O60902 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC19.49■□□□□ 0.71
SHOX2O60902 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SHOX2O60902 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SHOX2O60902 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC19.49■□□□□ 0.71
SHOX2O60902 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
SHOX2O60902 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
SHOX2O60902 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC19.49■□□□□ 0.71
SHOX2O60902 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SHOX2O60902 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC19.49■□□□□ 0.71
SHOX2O60902 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SHOX2O60902 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC19.49■□□□□ 0.71
SHOX2O60902 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SHOX2O60902 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SHOX2O60902 CEP83-AS1-201ENST00000623122 2482 ntBASIC19.49■□□□□ 0.71
SHOX2O60902 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SHOX2O60902 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SHOX2O60902 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SHOX2O60902 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SHOX2O60902 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC19.49■□□□□ 0.71
SHOX2O60902 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC19.49■□□□□ 0.71
SHOX2O60902 AL162741.1-201ENST00000565563 1558 ntBASIC19.49■□□□□ 0.71
SHOX2O60902 PXK-206ENST00000463280 2825 ntTSL 2 BASIC19.48■□□□□ 0.71
SHOX2O60902 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SHOX2O60902 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC19.48■□□□□ 0.71
SHOX2O60902 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC19.48■□□□□ 0.71
SHOX2O60902 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SHOX2O60902 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SHOX2O60902 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
SHOX2O60902 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
SHOX2O60902 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
SHOX2O60902 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SHOX2O60902 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SHOX2O60902 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
SHOX2O60902 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SHOX2O60902 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SHOX2O60902 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC19.48■□□□□ 0.71
SHOX2O60902 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC19.48■□□□□ 0.71
SHOX2O60902 SF1-220ENST00000626028 704 ntTSL 2 BASIC19.48■□□□□ 0.71
SHOX2O60902 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC19.48■□□□□ 0.71
SHOX2O60902 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SHOX2O60902 KRT16P6-202ENST00000425692 1426 ntBASIC19.48■□□□□ 0.71
SHOX2O60902 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
SHOX2O60902 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
SHOX2O60902 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC19.48■□□□□ 0.71
SHOX2O60902 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SHOX2O60902 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC19.48■□□□□ 0.71
SHOX2O60902 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SHOX2O60902 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC19.48■□□□□ 0.71
SHOX2O60902 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC19.48■□□□□ 0.71
SHOX2O60902 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SHOX2O60902 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SHOX2O60902 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SHOX2O60902 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SHOX2O60902 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC19.48■□□□□ 0.71
SHOX2O60902 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
SHOX2O60902 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms