Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
SGCEO43556 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SGCEO43556 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
SGCEO43556 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
SGCEO43556 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC17.18■□□□□ 0.34
SGCEO43556 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC17.18■□□□□ 0.34
SGCEO43556 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SGCEO43556 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SGCEO43556 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SGCEO43556 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC17.18■□□□□ 0.34
SGCEO43556 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
SGCEO43556 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SGCEO43556 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
SGCEO43556 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC17.18■□□□□ 0.34
SGCEO43556 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
SGCEO43556 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SGCEO43556 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC17.18■□□□□ 0.34
SGCEO43556 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
SGCEO43556 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC17.18■□□□□ 0.34
SGCEO43556 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC17.18■□□□□ 0.34
SGCEO43556 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SGCEO43556 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC17.18■□□□□ 0.34
SGCEO43556 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC17.18■□□□□ 0.34
SGCEO43556 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
SGCEO43556 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC17.18■□□□□ 0.34
SGCEO43556 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
SGCEO43556 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC17.18■□□□□ 0.34
SGCEO43556 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
SGCEO43556 AC120498.9-201ENST00000339021 3867 ntBASIC17.18■□□□□ 0.34
SGCEO43556 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
SGCEO43556 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SGCEO43556 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
SGCEO43556 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC17.17■□□□□ 0.34
SGCEO43556 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
SGCEO43556 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
SGCEO43556 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
SGCEO43556 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
SGCEO43556 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SGCEO43556 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SGCEO43556 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SGCEO43556 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SGCEO43556 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SGCEO43556 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
SGCEO43556 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SGCEO43556 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
SGCEO43556 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SGCEO43556 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC17.17■□□□□ 0.34
SGCEO43556 UNC93B4-201ENST00000505679 747 ntBASIC17.17■□□□□ 0.34
SGCEO43556 RNA5SP413-201ENST00000516373 109 ntBASIC17.17■□□□□ 0.34
SGCEO43556 UNC93B5-201ENST00000530315 699 ntBASIC17.17■□□□□ 0.34
SGCEO43556 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
SGCEO43556 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC17.17■□□□□ 0.34
SGCEO43556 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SGCEO43556 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
SGCEO43556 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
SGCEO43556 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
SGCEO43556 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
SGCEO43556 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
SGCEO43556 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SGCEO43556 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SGCEO43556 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC17.16■□□□□ 0.34
SGCEO43556 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SGCEO43556 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
SGCEO43556 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC17.16■□□□□ 0.34
SGCEO43556 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SGCEO43556 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SGCEO43556 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC17.16■□□□□ 0.34
SGCEO43556 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SGCEO43556 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SGCEO43556 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC17.16■□□□□ 0.34
SGCEO43556 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SGCEO43556 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC17.16■□□□□ 0.34
SGCEO43556 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC17.16■□□□□ 0.34
SGCEO43556 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC17.16■□□□□ 0.34
SGCEO43556 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC17.16■□□□□ 0.34
SGCEO43556 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SGCEO43556 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
SGCEO43556 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC17.16■□□□□ 0.34
SGCEO43556 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC17.16■□□□□ 0.34
SGCEO43556 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
SGCEO43556 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SGCEO43556 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SGCEO43556 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SGCEO43556 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
SGCEO43556 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SGCEO43556 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
SGCEO43556 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SGCEO43556 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
SGCEO43556 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC17.15■□□□□ 0.34
SGCEO43556 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
SGCEO43556 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC17.15■□□□□ 0.34
SGCEO43556 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
SGCEO43556 POLI-202ENST00000406285 2030 ntTSL 2 BASIC17.15■□□□□ 0.34
SGCEO43556 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
SGCEO43556 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
SGCEO43556 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC17.15■□□□□ 0.34
SGCEO43556 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
SGCEO43556 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC17.15■□□□□ 0.34
SGCEO43556 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC17.15■□□□□ 0.34
SGCEO43556 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms