Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
HOXC11O43248 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC19.85■□□□□ 0.77
HOXC11O43248 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC19.85■□□□□ 0.77
HOXC11O43248 AC116562.4-202ENST00000641738 218 ntBASIC19.85■□□□□ 0.77
HOXC11O43248 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC19.85■□□□□ 0.77
HOXC11O43248 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
HOXC11O43248 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
HOXC11O43248 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
HOXC11O43248 LGALS8-AS1-201ENST00000487567 1457 ntBASIC19.85■□□□□ 0.77
HOXC11O43248 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
HOXC11O43248 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC19.84■□□□□ 0.77
HOXC11O43248 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC19.84■□□□□ 0.77
HOXC11O43248 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC19.84■□□□□ 0.77
HOXC11O43248 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
HOXC11O43248 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
HOXC11O43248 HIST1H2APS4-201ENST00000362070 348 ntBASIC19.84■□□□□ 0.77
HOXC11O43248 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
HOXC11O43248 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
HOXC11O43248 LIN28AP1-201ENST00000429574 405 ntBASIC19.84■□□□□ 0.77
HOXC11O43248 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC19.84■□□□□ 0.77
HOXC11O43248 CCR12P-201ENST00000446203 998 ntBASIC19.84■□□□□ 0.77
HOXC11O43248 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
HOXC11O43248 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC19.84■□□□□ 0.77
HOXC11O43248 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC19.84■□□□□ 0.77
HOXC11O43248 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC19.84■□□□□ 0.77
HOXC11O43248 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC19.84■□□□□ 0.77
HOXC11O43248 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC19.84■□□□□ 0.77
HOXC11O43248 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC19.84■□□□□ 0.77
HOXC11O43248 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC19.83■□□□□ 0.77
HOXC11O43248 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC19.83■□□□□ 0.77
HOXC11O43248 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
HOXC11O43248 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
HOXC11O43248 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
HOXC11O43248 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC19.83■□□□□ 0.77
HOXC11O43248 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
HOXC11O43248 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
HOXC11O43248 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
HOXC11O43248 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
HOXC11O43248 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
HOXC11O43248 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
HOXC11O43248 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC19.83■□□□□ 0.77
HOXC11O43248 HMGA1P5-201ENST00000412453 271 ntBASIC19.83■□□□□ 0.77
HOXC11O43248 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC19.83■□□□□ 0.77
HOXC11O43248 ATP5G1P1-201ENST00000448724 379 ntBASIC19.83■□□□□ 0.77
HOXC11O43248 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
HOXC11O43248 NME3-204ENST00000563498 920 ntTSL 2 BASIC19.83■□□□□ 0.77
HOXC11O43248 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC19.83■□□□□ 0.77
HOXC11O43248 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
HOXC11O43248 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
HOXC11O43248 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.76
HOXC11O43248 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
HOXC11O43248 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
HOXC11O43248 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC19.83■□□□□ 0.76
HOXC11O43248 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
HOXC11O43248 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
HOXC11O43248 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.76
HOXC11O43248 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC19.83■□□□□ 0.76
HOXC11O43248 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
HOXC11O43248 KRT8P41-201ENST00000533985 1514 ntBASIC19.82■□□□□ 0.76
HOXC11O43248 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC19.82■□□□□ 0.76
HOXC11O43248 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
HOXC11O43248 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
HOXC11O43248 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
HOXC11O43248 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC19.82■□□□□ 0.76
HOXC11O43248 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
HOXC11O43248 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC19.82■□□□□ 0.76
HOXC11O43248 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC19.82■□□□□ 0.76
HOXC11O43248 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
HOXC11O43248 DUX4L26-201ENST00000489078 1255 ntBASIC19.82■□□□□ 0.76
HOXC11O43248 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC19.82■□□□□ 0.76
HOXC11O43248 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
HOXC11O43248 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
HOXC11O43248 LINC01465-201ENST00000408887 1940 ntBASIC19.82■□□□□ 0.76
HOXC11O43248 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC19.82■□□□□ 0.76
HOXC11O43248 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
HOXC11O43248 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC19.81■□□□□ 0.76
HOXC11O43248 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
HOXC11O43248 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC19.81■□□□□ 0.76
HOXC11O43248 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC19.81■□□□□ 0.76
HOXC11O43248 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
HOXC11O43248 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
HOXC11O43248 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
HOXC11O43248 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC19.81■□□□□ 0.76
HOXC11O43248 AC104076.2-201ENST00000448912 469 ntBASIC19.81■□□□□ 0.76
HOXC11O43248 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC19.81■□□□□ 0.76
HOXC11O43248 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC19.81■□□□□ 0.76
HOXC11O43248 AC010653.2-201ENST00000623505 997 ntBASIC19.81■□□□□ 0.76
HOXC11O43248 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC19.81■□□□□ 0.76
HOXC11O43248 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC19.81■□□□□ 0.76
HOXC11O43248 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
HOXC11O43248 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
HOXC11O43248 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC19.81■□□□□ 0.76
HOXC11O43248 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
HOXC11O43248 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
HOXC11O43248 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
HOXC11O43248 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
HOXC11O43248 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC19.8■□□□□ 0.76
HOXC11O43248 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
HOXC11O43248 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC19.8■□□□□ 0.76
HOXC11O43248 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC19.8■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms