Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
SLC28A1O00337 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
SLC28A1O00337 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC18.73■□□□□ 0.59
SLC28A1O00337 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SLC28A1O00337 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC18.73■□□□□ 0.59
SLC28A1O00337 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
SLC28A1O00337 SLC29A4P1-201ENST00000398760 971 ntBASIC18.73■□□□□ 0.59
SLC28A1O00337 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
SLC28A1O00337 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC18.73■□□□□ 0.59
SLC28A1O00337 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC18.73■□□□□ 0.59
SLC28A1O00337 RPS2P52-201ENST00000469610 820 ntBASIC18.73■□□□□ 0.59
SLC28A1O00337 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC18.73■□□□□ 0.59
SLC28A1O00337 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
SLC28A1O00337 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC18.73■□□□□ 0.59
SLC28A1O00337 ZNF815P-204ENST00000434898 1737 ntBASIC18.73■□□□□ 0.59
SLC28A1O00337 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SLC28A1O00337 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SLC28A1O00337 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SLC28A1O00337 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
SLC28A1O00337 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC18.73■□□□□ 0.59
SLC28A1O00337 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
SLC28A1O00337 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SLC28A1O00337 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SLC28A1O00337 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC18.73■□□□□ 0.59
SLC28A1O00337 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
SLC28A1O00337 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SLC28A1O00337 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
SLC28A1O00337 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
SLC28A1O00337 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SLC28A1O00337 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC18.72■□□□□ 0.59
SLC28A1O00337 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SLC28A1O00337 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC18.72■□□□□ 0.59
SLC28A1O00337 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC18.72■□□□□ 0.59
SLC28A1O00337 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC18.72■□□□□ 0.59
SLC28A1O00337 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SLC28A1O00337 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SLC28A1O00337 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC18.72■□□□□ 0.59
SLC28A1O00337 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SLC28A1O00337 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC18.72■□□□□ 0.59
SLC28A1O00337 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SLC28A1O00337 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC18.72■□□□□ 0.59
SLC28A1O00337 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SLC28A1O00337 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC18.72■□□□□ 0.59
SLC28A1O00337 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SLC28A1O00337 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC18.72■□□□□ 0.59
SLC28A1O00337 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SLC28A1O00337 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
SLC28A1O00337 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
SLC28A1O00337 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SLC28A1O00337 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC18.72■□□□□ 0.59
SLC28A1O00337 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
SLC28A1O00337 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC18.71■□□□□ 0.59
SLC28A1O00337 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SLC28A1O00337 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SLC28A1O00337 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
SLC28A1O00337 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SLC28A1O00337 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC18.71■□□□□ 0.59
SLC28A1O00337 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SLC28A1O00337 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SLC28A1O00337 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SLC28A1O00337 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC18.71■□□□□ 0.59
SLC28A1O00337 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SLC28A1O00337 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
SLC28A1O00337 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
SLC28A1O00337 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SLC28A1O00337 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SLC28A1O00337 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC18.71■□□□□ 0.59
SLC28A1O00337 BET1L-207ENST00000529614 560 ntTSL 5 BASIC18.71■□□□□ 0.59
SLC28A1O00337 MIR4758-201ENST00000577688 71 ntBASIC18.71■□□□□ 0.59
SLC28A1O00337 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
SLC28A1O00337 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC18.71■□□□□ 0.59
SLC28A1O00337 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SLC28A1O00337 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
SLC28A1O00337 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC18.71■□□□□ 0.59
SLC28A1O00337 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SLC28A1O00337 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SLC28A1O00337 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SLC28A1O00337 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
SLC28A1O00337 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SLC28A1O00337 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC18.7■□□□□ 0.58
SLC28A1O00337 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC18.7■□□□□ 0.58
SLC28A1O00337 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
SLC28A1O00337 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SLC28A1O00337 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
SLC28A1O00337 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC18.7■□□□□ 0.58
SLC28A1O00337 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SLC28A1O00337 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SLC28A1O00337 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SLC28A1O00337 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SLC28A1O00337 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SLC28A1O00337 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SLC28A1O00337 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SLC28A1O00337 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC18.7■□□□□ 0.58
SLC28A1O00337 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SLC28A1O00337 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC18.7■□□□□ 0.58
SLC28A1O00337 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SLC28A1O00337 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC18.7■□□□□ 0.58
SLC28A1O00337 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SLC28A1O00337 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
SLC28A1O00337 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms