Protein–RNA interactions for Protein: A6NDZ8

MBD3L4, Putative methyl-CpG-binding domain protein 3-like 4, humanhuman

Predicted RBP Predictions only

Length 208 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MBD3L4A6NDZ8 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
MBD3L4A6NDZ8 INGX-201ENST00000359239 846 ntBASIC17.13■□□□□ 0.33
MBD3L4A6NDZ8 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
MBD3L4A6NDZ8 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
MBD3L4A6NDZ8 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
MBD3L4A6NDZ8 HMGA1P5-201ENST00000412453 271 ntBASIC17.13■□□□□ 0.33
MBD3L4A6NDZ8 ATP5G1P1-201ENST00000448724 379 ntBASIC17.13■□□□□ 0.33
MBD3L4A6NDZ8 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
MBD3L4A6NDZ8 RBM42-202ENST00000586618 771 ntTSL 3 BASIC17.13■□□□□ 0.33
MBD3L4A6NDZ8 AC010653.2-201ENST00000623505 997 ntBASIC17.13■□□□□ 0.33
MBD3L4A6NDZ8 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
MBD3L4A6NDZ8 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC17.13■□□□□ 0.33
MBD3L4A6NDZ8 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
MBD3L4A6NDZ8 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
MBD3L4A6NDZ8 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC17.13■□□□□ 0.33
MBD3L4A6NDZ8 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC17.12■□□□□ 0.33
MBD3L4A6NDZ8 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
MBD3L4A6NDZ8 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC17.12■□□□□ 0.33
MBD3L4A6NDZ8 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
MBD3L4A6NDZ8 TCF3P1-201ENST00000423021 1937 ntBASIC17.12■□□□□ 0.33
MBD3L4A6NDZ8 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC17.12■□□□□ 0.33
MBD3L4A6NDZ8 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
MBD3L4A6NDZ8 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC17.12■□□□□ 0.33
MBD3L4A6NDZ8 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC17.12■□□□□ 0.33
MBD3L4A6NDZ8 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC17.12■□□□□ 0.33
MBD3L4A6NDZ8 CA15P1-201ENST00000481698 905 ntBASIC17.12■□□□□ 0.33
MBD3L4A6NDZ8 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
MBD3L4A6NDZ8 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC17.12■□□□□ 0.33
MBD3L4A6NDZ8 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC17.12■□□□□ 0.33
MBD3L4A6NDZ8 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC17.12■□□□□ 0.33
MBD3L4A6NDZ8 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC17.12■□□□□ 0.33
MBD3L4A6NDZ8 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC17.12■□□□□ 0.33
MBD3L4A6NDZ8 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
MBD3L4A6NDZ8 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
MBD3L4A6NDZ8 USP39-204ENST00000409766 2033 ntTSL 2 BASIC17.12■□□□□ 0.33
MBD3L4A6NDZ8 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
MBD3L4A6NDZ8 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
MBD3L4A6NDZ8 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
MBD3L4A6NDZ8 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
MBD3L4A6NDZ8 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
MBD3L4A6NDZ8 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
MBD3L4A6NDZ8 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
MBD3L4A6NDZ8 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC17.12■□□□□ 0.33
MBD3L4A6NDZ8 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC17.11■□□□□ 0.33
MBD3L4A6NDZ8 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
MBD3L4A6NDZ8 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC17.11■□□□□ 0.33
MBD3L4A6NDZ8 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
MBD3L4A6NDZ8 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
MBD3L4A6NDZ8 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
MBD3L4A6NDZ8 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC17.11■□□□□ 0.33
MBD3L4A6NDZ8 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
MBD3L4A6NDZ8 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
MBD3L4A6NDZ8 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
MBD3L4A6NDZ8 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC17.11■□□□□ 0.33
MBD3L4A6NDZ8 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
MBD3L4A6NDZ8 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
MBD3L4A6NDZ8 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
MBD3L4A6NDZ8 CKBP1-201ENST00000565489 1086 ntBASIC17.11■□□□□ 0.33
MBD3L4A6NDZ8 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
MBD3L4A6NDZ8 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
MBD3L4A6NDZ8 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
MBD3L4A6NDZ8 AL445228.2-201ENST00000605589 952 ntBASIC17.11■□□□□ 0.33
MBD3L4A6NDZ8 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC17.11■□□□□ 0.33
MBD3L4A6NDZ8 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
MBD3L4A6NDZ8 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
MBD3L4A6NDZ8 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC17.11■□□□□ 0.33
MBD3L4A6NDZ8 AC092338.2-201ENST00000568827 1415 ntBASIC17.11■□□□□ 0.33
MBD3L4A6NDZ8 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC17.11■□□□□ 0.33
MBD3L4A6NDZ8 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC17.11■□□□□ 0.33
MBD3L4A6NDZ8 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
MBD3L4A6NDZ8 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
MBD3L4A6NDZ8 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
MBD3L4A6NDZ8 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC17.1■□□□□ 0.33
MBD3L4A6NDZ8 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
MBD3L4A6NDZ8 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
MBD3L4A6NDZ8 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
MBD3L4A6NDZ8 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
MBD3L4A6NDZ8 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
MBD3L4A6NDZ8 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
MBD3L4A6NDZ8 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
MBD3L4A6NDZ8 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
MBD3L4A6NDZ8 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
MBD3L4A6NDZ8 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC17.1■□□□□ 0.33
MBD3L4A6NDZ8 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC17.1■□□□□ 0.33
MBD3L4A6NDZ8 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC17.1■□□□□ 0.33
MBD3L4A6NDZ8 AC007663.1-201ENST00000438948 1240 ntBASIC17.1■□□□□ 0.33
MBD3L4A6NDZ8 TSPY17P-201ENST00000450329 467 ntBASIC17.1■□□□□ 0.33
MBD3L4A6NDZ8 KRT18P35-201ENST00000510488 1269 ntBASIC17.1■□□□□ 0.33
MBD3L4A6NDZ8 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC17.1■□□□□ 0.33
MBD3L4A6NDZ8 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
MBD3L4A6NDZ8 NME3-204ENST00000563498 920 ntTSL 2 BASIC17.1■□□□□ 0.33
MBD3L4A6NDZ8 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC17.1■□□□□ 0.33
MBD3L4A6NDZ8 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC17.1■□□□□ 0.33
MBD3L4A6NDZ8 AL023803.3-201ENST00000615559 522 ntBASIC17.1■□□□□ 0.33
MBD3L4A6NDZ8 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC17.1■□□□□ 0.33
MBD3L4A6NDZ8 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
MBD3L4A6NDZ8 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
MBD3L4A6NDZ8 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
MBD3L4A6NDZ8 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC17.1■□□□□ 0.33
MBD3L4A6NDZ8 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms