Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 SYT1-212ENST00000552744 2718 ntAPPRIS P3 TSL 1 (best) BASIC6.28□□□□□ -1.4
COL8A1P27658 PART1-203ENST00000515734 2569 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
COL8A1P27658 LDAH-208ENST00000435420 3837 ntTSL 2 BASIC6.28□□□□□ -1.4
COL8A1P27658 BTBD10-210ENST00000530907 1871 ntAPPRIS ALT1 TSL 2 BASIC6.28□□□□□ -1.4
COL8A1P27658 ZNF568-215ENST00000617745 2441 ntTSL 5 BASIC6.28□□□□□ -1.4
COL8A1P27658 NRXN3-203ENST00000428277 4219 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
COL8A1P27658 LINC01829-202ENST00000433133 2100 ntTSL 2 BASIC6.28□□□□□ -1.4
COL8A1P27658 SGO1-205ENST00000419233 1582 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
COL8A1P27658 AC090198.1-201ENST00000518639 2355 ntTSL 5 BASIC6.28□□□□□ -1.4
COL8A1P27658 MAGT1-205ENST00000618282 2788 ntAPPRIS ALT1 TSL 1 (best) BASIC6.28□□□□□ -1.4
COL8A1P27658 MAPK10-377ENST00000642006 2752 ntBASIC6.28□□□□□ -1.4
COL8A1P27658 HMG20A-202ENST00000381714 4112 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
COL8A1P27658 GABPB2-202ENST00000368918 8964 ntAPPRIS P3 TSL 1 (best) BASIC6.28□□□□□ -1.4
COL8A1P27658 AC104083.1-201ENST00000569449 2615 ntBASIC6.28□□□□□ -1.4
COL8A1P27658 SLC7A6-216ENST00000618043 6124 ntTSL 5 BASIC6.28□□□□□ -1.4
COL8A1P27658 CLSPN-201ENST00000251195 4769 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
COL8A1P27658 RPL7A-202ENST00000323345 891 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
COL8A1P27658 OR10R3P-201ENST00000361688 942 ntBASIC6.28□□□□□ -1.4
COL8A1P27658 RNU1-5P-201ENST00000362684 144 ntBASIC6.28□□□□□ -1.4
COL8A1P27658 RNA5SP382-201ENST00000363355 112 ntBASIC6.28□□□□□ -1.4
COL8A1P27658 TINAG-203ENST00000370869 782 ntTSL 3 BASIC6.28□□□□□ -1.4
COL8A1P27658 IGLV3-16-201ENST00000390311 385 ntAPPRIS P1 BASIC6.28□□□□□ -1.4
COL8A1P27658 IL6-203ENST00000401651 539 ntTSL 2 BASIC6.28□□□□□ -1.4
COL8A1P27658 RNU6-77P-201ENST00000410554 91 ntBASIC6.28□□□□□ -1.4
COL8A1P27658 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC6.28□□□□□ -1.4
COL8A1P27658 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC6.28□□□□□ -1.4
COL8A1P27658 FO393401.1-203ENST00000416260 486 ntTSL 5 BASIC6.28□□□□□ -1.4
COL8A1P27658 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC6.28□□□□□ -1.4
COL8A1P27658 DUTP6-201ENST00000425573 462 ntBASIC6.28□□□□□ -1.4
COL8A1P27658 AC007559.1-201ENST00000428736 355 ntBASIC6.28□□□□□ -1.4
COL8A1P27658 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC6.28□□□□□ -1.4
COL8A1P27658 AL139042.1-201ENST00000429137 305 ntTSL 3 BASIC6.28□□□□□ -1.4
COL8A1P27658 AC006335.2-201ENST00000437993 330 ntBASIC6.28□□□□□ -1.4
COL8A1P27658 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC6.28□□□□□ -1.4
COL8A1P27658 FUNDC2P2-202ENST00000443452 493 ntBASIC6.28□□□□□ -1.4
COL8A1P27658 RPL17P49-201ENST00000443728 411 ntBASIC6.28□□□□□ -1.4
COL8A1P27658 AC007383.1-201ENST00000445875 636 ntBASIC6.28□□□□□ -1.4
COL8A1P27658 AC099786.1-201ENST00000446238 670 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
COL8A1P27658 AC246785.3-201ENST00000455105 314 ntTSL 5 BASIC6.28□□□□□ -1.4
COL8A1P27658 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC6.28□□□□□ -1.4
COL8A1P27658 PPP4R2-207ENST00000495566 559 ntTSL 3 BASIC6.28□□□□□ -1.4
COL8A1P27658 AC139272.1-201ENST00000505516 640 ntBASIC6.28□□□□□ -1.4
COL8A1P27658 LINC02200-202ENST00000508879 615 ntTSL 3 BASIC6.28□□□□□ -1.4
COL8A1P27658 LINC02512-201ENST00000509548 429 ntTSL 5 BASIC6.28□□□□□ -1.4
COL8A1P27658 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC6.28□□□□□ -1.4
COL8A1P27658 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC6.28□□□□□ -1.4
COL8A1P27658 AC018797.3-201ENST00000513388 1241 ntBASIC6.28□□□□□ -1.4
COL8A1P27658 RNU6-976P-201ENST00000516086 111 ntBASIC6.28□□□□□ -1.4
COL8A1P27658 ST13P6-201ENST00000522430 1102 ntBASIC6.28□□□□□ -1.4
COL8A1P27658 IGKV3D-34-201ENST00000522638 302 ntBASIC6.28□□□□□ -1.4
COL8A1P27658 ARL6IP1P3-201ENST00000524544 560 ntBASIC6.28□□□□□ -1.4
COL8A1P27658 RRN3P3-201ENST00000549207 578 ntBASIC6.28□□□□□ -1.4
COL8A1P27658 AC004551.1-201ENST00000552784 575 ntTSL 4 BASIC6.28□□□□□ -1.4
COL8A1P27658 ASXL1-208ENST00000555343 1034 ntTSL 5 BASIC6.28□□□□□ -1.4
COL8A1P27658 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC6.28□□□□□ -1.4
COL8A1P27658 IDH3A-223ENST00000561366 389 ntTSL 3 BASIC6.28□□□□□ -1.4
COL8A1P27658 AC012146.1-204ENST00000570712 426 ntTSL 3 BASIC6.28□□□□□ -1.4
COL8A1P27658 TVP23CP2-201ENST00000571473 623 ntBASIC6.28□□□□□ -1.4
COL8A1P27658 AC006441.4-202ENST00000577621 510 ntTSL 3 BASIC6.28□□□□□ -1.4
COL8A1P27658 AC069061.2-201ENST00000580686 480 ntTSL 3 BASIC6.28□□□□□ -1.4
COL8A1P27658 AC005324.5-201ENST00000584540 571 ntTSL 5 BASIC6.28□□□□□ -1.4
COL8A1P27658 AC010327.2-201ENST00000587647 488 ntBASIC6.28□□□□□ -1.4
COL8A1P27658 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC6.28□□□□□ -1.4
COL8A1P27658 MAPKAPK5-AS1-205ENST00000590479 543 ntTSL 2 BASIC6.28□□□□□ -1.4
COL8A1P27658 AL451085.1-201ENST00000604546 690 ntBASIC6.28□□□□□ -1.4
COL8A1P27658 AC107871.2-201ENST00000612894 502 ntBASIC6.28□□□□□ -1.4
COL8A1P27658 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC6.28□□□□□ -1.4
COL8A1P27658 AP004607.9-201ENST00000618202 316 ntBASIC6.28□□□□□ -1.4
COL8A1P27658 HNF1A-AS1-205ENST00000619441 343 ntTSL 3 BASIC6.28□□□□□ -1.4
COL8A1P27658 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC6.28□□□□□ -1.4
COL8A1P27658 CLEC1A-204ENST00000457018 1686 ntAPPRIS ALT2 TSL 2 BASIC6.28□□□□□ -1.4
COL8A1P27658 IL1RAP-202ENST00000317757 5413 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
COL8A1P27658 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC6.28□□□□□ -1.4
COL8A1P27658 CDH12-201ENST00000382254 4164 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
COL8A1P27658 BOLL-204ENST00000430004 2987 ntTSL 2 BASIC6.28□□□□□ -1.4
COL8A1P27658 EPS8-213ENST00000543612 2965 ntAPPRIS P1 TSL 2 BASIC6.28□□□□□ -1.4
COL8A1P27658 IL31RA-206ENST00000447346 2577 ntAPPRIS P3 TSL 1 (best) BASIC6.28□□□□□ -1.4
COL8A1P27658 DDX1-208ENST00000621973 2183 ntTSL 5 BASIC6.28□□□□□ -1.4
COL8A1P27658 ZYG11B-201ENST00000294353 8093 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
COL8A1P27658 RBBP4-202ENST00000373493 7943 ntAPPRIS P3 TSL 1 (best) BASIC6.28□□□□□ -1.4
COL8A1P27658 FBXL4-202ENST00000369244 8035 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
COL8A1P27658 MBL2-201ENST00000373968 3569 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
COL8A1P27658 SPINK5-203ENST00000398454 2915 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
COL8A1P27658 SH2D1B-201ENST00000367929 2523 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
COL8A1P27658 NPFFR2-204ENST00000395999 1866 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
COL8A1P27658 HERC2-201ENST00000261609 15337 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
COL8A1P27658 CHURC1-203ENST00000549115 2629 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
COL8A1P27658 ZNF449-201ENST00000339249 3773 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
COL8A1P27658 MTND5P30-201ENST00000452896 1731 ntBASIC6.28□□□□□ -1.4
COL8A1P27658 MORF4L2-206ENST00000433176 1965 ntAPPRIS P1 TSL 2 BASIC6.27□□□□□ -1.4
COL8A1P27658 SLC9A4-201ENST00000295269 4138 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.4
COL8A1P27658 LINC00561-201ENST00000565815 2738 ntBASIC6.27□□□□□ -1.41
COL8A1P27658 CASP14-201ENST00000427043 3241 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
COL8A1P27658 ATF2-221ENST00000538946 1325 ntTSL 5 BASIC6.27□□□□□ -1.41
COL8A1P27658 MELK-207ENST00000536860 2342 ntTSL 2 BASIC6.27□□□□□ -1.41
COL8A1P27658 ADGRE4P-202ENST00000600751 2810 ntTSL 5 BASIC6.27□□□□□ -1.41
COL8A1P27658 C8orf37-201ENST00000286688 3334 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
COL8A1P27658 CD101-202ENST00000369470 3324 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
COL8A1P27658 SENP1-201ENST00000448372 4679 ntAPPRIS P2 TSL 1 (best) BASIC6.27□□□□□ -1.41
COL8A1P27658 MUC21-201ENST00000376296 3651 ntAPPRIS P2 TSL 1 (best) BASIC6.27□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 75.2 ms