Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC4.44□□□□□ -1.7
SDC1P18827 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC4.44□□□□□ -1.7
SDC1P18827 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
SDC1P18827 OR10AG1-201ENST00000312345 1016 ntAPPRIS P1 BASIC4.44□□□□□ -1.7
SDC1P18827 MIR195-201ENST00000385194 87 ntBASIC4.44□□□□□ -1.7
SDC1P18827 CDKL4-202ENST00000395035 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC4.44□□□□□ -1.7
SDC1P18827 RSU1P3-201ENST00000412878 835 ntBASIC4.44□□□□□ -1.7
SDC1P18827 RPL23AP27-201ENST00000415161 451 ntBASIC4.44□□□□□ -1.7
SDC1P18827 BX510359.3-201ENST00000422168 306 ntBASIC4.44□□□□□ -1.7
SDC1P18827 AC006455.6-201ENST00000426192 893 ntBASIC4.44□□□□□ -1.7
SDC1P18827 AC005772.1-201ENST00000446671 976 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
SDC1P18827 AL591623.2-201ENST00000449978 222 ntBASIC4.44□□□□□ -1.7
SDC1P18827 AC108463.1-201ENST00000450258 347 ntBASIC4.44□□□□□ -1.7
SDC1P18827 ATP5G1P3-201ENST00000463301 410 ntBASIC4.44□□□□□ -1.7
SDC1P18827 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC4.44□□□□□ -1.7
SDC1P18827 OR52A4P-202ENST00000481634 799 ntBASIC4.44□□□□□ -1.7
SDC1P18827 AC026434.1-201ENST00000511474 454 ntTSL 3 BASIC4.44□□□□□ -1.7
SDC1P18827 LINC02429-202ENST00000513836 694 ntTSL 3 BASIC4.44□□□□□ -1.7
SDC1P18827 RNA5SP446-201ENST00000515955 82 ntBASIC4.44□□□□□ -1.7
SDC1P18827 HMGB1P19-201ENST00000517578 577 ntBASIC4.44□□□□□ -1.7
SDC1P18827 OR4V1P-201ENST00000525394 1140 ntBASIC4.44□□□□□ -1.7
SDC1P18827 MS4A7-208ENST00000530234 730 ntTSL 3 BASIC4.44□□□□□ -1.7
SDC1P18827 AC108471.2-203ENST00000532680 517 ntTSL 5 BASIC4.44□□□□□ -1.7
SDC1P18827 CYCSP28-201ENST00000534284 321 ntBASIC4.44□□□□□ -1.7
SDC1P18827 ATP5J2P6-201ENST00000565203 266 ntBASIC4.44□□□□□ -1.7
SDC1P18827 AC011487.3-201ENST00000593607 453 ntBASIC4.44□□□□□ -1.7
SDC1P18827 AL391358.1-201ENST00000605342 190 ntBASIC4.44□□□□□ -1.7
SDC1P18827 C7orf77-201ENST00000616258 548 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
SDC1P18827 OSER1-AS1-205ENST00000623343 827 ntTSL 5 BASIC4.44□□□□□ -1.7
SDC1P18827 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC4.44□□□□□ -1.7
SDC1P18827 C15orf41-212ENST00000567389 2618 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
SDC1P18827 RBMS3-205ENST00000434693 8540 ntTSL 5 BASIC4.44□□□□□ -1.7
SDC1P18827 EOGT-210ENST00000615922 1931 ntBASIC4.44□□□□□ -1.7
SDC1P18827 MAPK10-320ENST00000641462 6696 ntBASIC4.44□□□□□ -1.7
SDC1P18827 GPR85-201ENST00000297146 5079 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
SDC1P18827 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
SDC1P18827 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC4.44□□□□□ -1.7
SDC1P18827 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
SDC1P18827 MAPK10-286ENST00000641208 8747 ntBASIC4.44□□□□□ -1.7
SDC1P18827 ING3-205ENST00000445699 1723 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
SDC1P18827 TDO2-208ENST00000536354 1701 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
SDC1P18827 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC4.43□□□□□ -1.7
SDC1P18827 DAOA-211ENST00000618629 1368 ntAPPRIS P3 TSL 5 BASIC4.43□□□□□ -1.7
SDC1P18827 KRTAP24-1-201ENST00000340345 1650 ntAPPRIS P1 BASIC4.43□□□□□ -1.7
SDC1P18827 RNA5SP191-201ENST00000362585 102 ntBASIC4.43□□□□□ -1.7
SDC1P18827 ARGLU1-202ENST00000375926 821 ntAPPRIS P1 TSL 5 BASIC4.43□□□□□ -1.7
SDC1P18827 RN7SKP199-201ENST00000410325 305 ntBASIC4.43□□□□□ -1.7
SDC1P18827 RNU4-34P-201ENST00000410431 124 ntBASIC4.43□□□□□ -1.7
SDC1P18827 DPPA2P3-201ENST00000411853 655 ntBASIC4.43□□□□□ -1.7
SDC1P18827 MTCYBP7-201ENST00000419540 1134 ntBASIC4.43□□□□□ -1.7
SDC1P18827 AC021035.1-201ENST00000421597 427 ntTSL 3 BASIC4.43□□□□□ -1.7
SDC1P18827 AL590623.1-201ENST00000427864 105 ntBASIC4.43□□□□□ -1.7
SDC1P18827 LINC02013-201ENST00000438156 526 ntTSL 2 BASIC4.43□□□□□ -1.7
SDC1P18827 H2AFZP5-201ENST00000446960 382 ntBASIC4.43□□□□□ -1.7
SDC1P18827 HGF-207ENST00000453018 721 ntTSL 3 BASIC4.43□□□□□ -1.7
SDC1P18827 RPL7AP6-201ENST00000477943 801 ntBASIC4.43□□□□□ -1.7
SDC1P18827 RN7SL629P-201ENST00000489622 285 ntBASIC4.43□□□□□ -1.7
SDC1P18827 RN7SL808P-201ENST00000496066 299 ntBASIC4.43□□□□□ -1.7
SDC1P18827 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC4.43□□□□□ -1.7
SDC1P18827 AC147055.3-201ENST00000510547 851 ntBASIC4.43□□□□□ -1.7
SDC1P18827 AC126768.1-201ENST00000511698 490 ntTSL 3 BASIC4.43□□□□□ -1.7
SDC1P18827 HDAC2-AS2-209ENST00000519270 1244 ntTSL 4 BASIC4.43□□□□□ -1.7
SDC1P18827 IGLV2-28-201ENST00000520681 304 ntBASIC4.43□□□□□ -1.7
SDC1P18827 AC044810.3-201ENST00000527565 589 ntTSL 3 BASIC4.43□□□□□ -1.7
SDC1P18827 AC008250.1-201ENST00000539874 522 ntTSL 3 BASIC4.43□□□□□ -1.7
SDC1P18827 LINC01580-201ENST00000555255 561 ntTSL 4 BASIC4.43□□□□□ -1.7
SDC1P18827 AL132712.2-201ENST00000556653 127 ntTSL 3 BASIC4.43□□□□□ -1.7
SDC1P18827 RPL21P7-201ENST00000557463 483 ntBASIC4.43□□□□□ -1.7
SDC1P18827 LINC02186-201ENST00000575767 885 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
SDC1P18827 AC023932.1-201ENST00000582726 429 ntTSL 3 BASIC4.43□□□□□ -1.7
SDC1P18827 AL445222.1-201ENST00000607259 628 ntBASIC4.43□□□□□ -1.7
SDC1P18827 AC087633.2-201ENST00000618611 725 ntTSL 3 BASIC4.43□□□□□ -1.7
SDC1P18827 AC087385.3-201ENST00000620477 187 ntBASIC4.43□□□□□ -1.7
SDC1P18827 AC105105.5-201ENST00000622635 1294 ntBASIC4.43□□□□□ -1.7
SDC1P18827 LINC00216-201ENST00000623548 1126 ntBASIC4.43□□□□□ -1.7
SDC1P18827 SMARCA2-231ENST00000634931 939 ntTSL 5 BASIC4.43□□□□□ -1.7
SDC1P18827 AC006994.2-202ENST00000639259 3828 ntTSL 5 BASIC4.43□□□□□ -1.7
SDC1P18827 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC4.43□□□□□ -1.7
SDC1P18827 NKRF-202ENST00000371527 3741 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
SDC1P18827 AC135352.1-201ENST00000506173 1418 ntBASIC4.43□□□□□ -1.7
SDC1P18827 ZFAND6-213ENST00000559835 1446 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
SDC1P18827 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC4.43□□□□□ -1.7
SDC1P18827 VNN3-211ENST00000509351 1700 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
SDC1P18827 CIR1P2-201ENST00000514821 1342 ntBASIC4.43□□□□□ -1.7
SDC1P18827 AC092821.1-201ENST00000640129 4180 ntAPPRIS P1 TSL 5 BASIC4.43□□□□□ -1.7
SDC1P18827 TIPARP-207ENST00000542783 3681 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
SDC1P18827 HSFY1P1-202ENST00000425038 1381 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
SDC1P18827 AC120338.1-201ENST00000625074 1541 ntBASIC4.42□□□□□ -1.7
SDC1P18827 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
SDC1P18827 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC4.42□□□□□ -1.7
SDC1P18827 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
SDC1P18827 MYBPC1-203ENST00000392934 3644 ntAPPRIS ALT2 TSL 2 BASIC4.42□□□□□ -1.7
SDC1P18827 GNAS-202ENST00000306090 477 ntTSL 5 BASIC4.42□□□□□ -1.7
SDC1P18827 C1orf100-201ENST00000308105 579 ntAPPRIS P1 TSL 2 BASIC4.42□□□□□ -1.7
SDC1P18827 RNU1-20P-201ENST00000363314 162 ntBASIC4.42□□□□□ -1.7
SDC1P18827 S100A9-201ENST00000368738 577 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
SDC1P18827 SNORD65-201ENST00000391079 73 ntBASIC4.42□□□□□ -1.7
SDC1P18827 ZC3H14-205ENST00000393514 2195 ntTSL 5 BASIC4.42□□□□□ -1.7
SDC1P18827 MRM2-202ENST00000407040 582 ntTSL 3 BASIC4.42□□□□□ -1.7
SDC1P18827 MIR1178-201ENST00000408396 91 ntBASIC4.42□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 72.5 ms