Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 AL161896.1-201ENST00000597248 508 ntTSL 4 BASIC5.37□□□□□ -1.55
VPS4AQ9UN37 AP002906.1-201ENST00000603405 233 ntBASIC5.37□□□□□ -1.55
VPS4AQ9UN37 AC024940.4-201ENST00000605507 246 ntBASIC5.37□□□□□ -1.55
VPS4AQ9UN37 LINC01440-205ENST00000608080 737 ntTSL 3 BASIC5.37□□□□□ -1.55
VPS4AQ9UN37 AL121612.2-201ENST00000612261 482 ntBASIC5.37□□□□□ -1.55
VPS4AQ9UN37 AC007204.2-201ENST00000615022 616 ntBASIC5.37□□□□□ -1.55
VPS4AQ9UN37 MIR6133-201ENST00000617057 108 ntBASIC5.37□□□□□ -1.55
VPS4AQ9UN37 AL355493.4-201ENST00000618530 292 ntBASIC5.37□□□□□ -1.55
VPS4AQ9UN37 SERPINB10-204ENST00000619595 1194 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
VPS4AQ9UN37 CU639417.4-201ENST00000623928 207 ntBASIC5.37□□□□□ -1.55
VPS4AQ9UN37 AC134980.1-203ENST00000640541 570 ntTSL 4 BASIC5.37□□□□□ -1.55
VPS4AQ9UN37 LIMA1-203ENST00000547825 3920 ntAPPRIS ALT2 TSL 1 (best) BASIC5.37□□□□□ -1.55
VPS4AQ9UN37 ELAVL4-205ENST00000371824 3966 ntAPPRIS P5 TSL 1 (best) BASIC5.37□□□□□ -1.55
VPS4AQ9UN37 ZMAT1-201ENST00000372782 3185 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
VPS4AQ9UN37 ALCAM-205ENST00000472644 4189 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
VPS4AQ9UN37 BAZ2B-203ENST00000392782 8058 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
VPS4AQ9UN37 NXF4-202ENST00000416098 1465 ntBASIC5.37□□□□□ -1.55
VPS4AQ9UN37 DYNC1I2-225ENST00000508530 2494 ntAPPRIS ALT1 TSL 1 (best) BASIC5.37□□□□□ -1.55
VPS4AQ9UN37 AC007938.2-201ENST00000604666 2634 ntBASIC5.37□□□□□ -1.55
VPS4AQ9UN37 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
VPS4AQ9UN37 F9-201ENST00000218099 2780 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
VPS4AQ9UN37 ZNF678-201ENST00000343776 8556 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
VPS4AQ9UN37 ZNF230-201ENST00000429154 4115 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
VPS4AQ9UN37 PSG7-201ENST00000406070 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC5.36□□□□□ -1.55
VPS4AQ9UN37 AASDH-201ENST00000205214 3590 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
VPS4AQ9UN37 SFT2D2-201ENST00000271375 11040 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
VPS4AQ9UN37 NBPF10-201ENST00000583866 13042 ntAPPRIS P1 TSL 5 BASIC5.36□□□□□ -1.55
VPS4AQ9UN37 AC010127.1-209ENST00000447809 2305 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
VPS4AQ9UN37 NKAIN2-204ENST00000545433 3052 ntTSL 5 BASIC5.36□□□□□ -1.55
VPS4AQ9UN37 AL353796.1-201ENST00000561542 3241 ntBASIC5.36□□□□□ -1.55
VPS4AQ9UN37 ENKUR-205ENST00000615958 3294 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
VPS4AQ9UN37 ZNF567-203ENST00000585696 3734 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
VPS4AQ9UN37 TAS2R8-201ENST00000240615 1243 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
VPS4AQ9UN37 RPL39P5-201ENST00000273411 449 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
VPS4AQ9UN37 RN7SKP145-201ENST00000363291 303 ntBASIC5.36□□□□□ -1.55
VPS4AQ9UN37 SPINK9-201ENST00000377906 453 ntAPPRIS P2 TSL 1 (best) BASIC5.36□□□□□ -1.55
VPS4AQ9UN37 RNU6-906P-201ENST00000384700 70 ntBASIC5.36□□□□□ -1.55
VPS4AQ9UN37 U3.28-201ENST00000391249 210 ntBASIC5.36□□□□□ -1.55
VPS4AQ9UN37 AL645927.1-201ENST00000396783 406 ntBASIC5.36□□□□□ -1.55
VPS4AQ9UN37 HIST1H3PS1-201ENST00000404612 417 ntBASIC5.36□□□□□ -1.55
VPS4AQ9UN37 AP002530.1-201ENST00000405705 684 ntBASIC5.36□□□□□ -1.55
VPS4AQ9UN37 HMGB3P31-201ENST00000413333 595 ntBASIC5.36□□□□□ -1.55
VPS4AQ9UN37 AC003075.1-202ENST00000419382 720 ntTSL 3 BASIC5.36□□□□□ -1.55
VPS4AQ9UN37 BX470102.1-201ENST00000420695 531 ntTSL 2 BASIC5.36□□□□□ -1.55
VPS4AQ9UN37 AL359853.3-201ENST00000423879 544 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
VPS4AQ9UN37 AC092648.1-201ENST00000425870 423 ntBASIC5.36□□□□□ -1.55
VPS4AQ9UN37 HSPE1P16-201ENST00000426640 348 ntBASIC5.36□□□□□ -1.55
VPS4AQ9UN37 Z82246.1-201ENST00000428201 457 ntTSL 2 BASIC5.36□□□□□ -1.55
VPS4AQ9UN37 RPL12P28-201ENST00000430852 489 ntBASIC5.36□□□□□ -1.55
VPS4AQ9UN37 AC004990.1-201ENST00000431722 564 ntTSL 4 BASIC5.36□□□□□ -1.55
VPS4AQ9UN37 AL359265.1-201ENST00000440296 795 ntBASIC5.36□□□□□ -1.55
VPS4AQ9UN37 VN1R25P-201ENST00000443385 738 ntBASIC5.36□□□□□ -1.55
VPS4AQ9UN37 SPANXN4-202ENST00000446864 431 ntAPPRIS P2 TSL 1 (best) BASIC5.36□□□□□ -1.55
VPS4AQ9UN37 PSAT1P4-201ENST00000466500 526 ntBASIC5.36□□□□□ -1.55
VPS4AQ9UN37 RPS27AP16-201ENST00000492222 470 ntBASIC5.36□□□□□ -1.55
VPS4AQ9UN37 AC124242.1-202ENST00000499554 1052 ntTSL 3 BASIC5.36□□□□□ -1.55
VPS4AQ9UN37 AC026719.1-201ENST00000506059 456 ntTSL 3 BASIC5.36□□□□□ -1.55
VPS4AQ9UN37 AC107391.1-201ENST00000514966 412 ntTSL 2 BASIC5.36□□□□□ -1.55
VPS4AQ9UN37 RNU6-615P-201ENST00000516065 106 ntBASIC5.36□□□□□ -1.55
VPS4AQ9UN37 RNU6-1308P-201ENST00000516817 103 ntBASIC5.36□□□□□ -1.55
VPS4AQ9UN37 RPL26L1-203ENST00000519239 679 ntAPPRIS P1 TSL 2 BASIC5.36□□□□□ -1.55
VPS4AQ9UN37 PCAT1-201ENST00000519319 734 ntTSL 2 BASIC5.36□□□□□ -1.55
VPS4AQ9UN37 AC068672.3-201ENST00000524017 824 ntTSL 3 BASIC5.36□□□□□ -1.55
VPS4AQ9UN37 ZFPM2-AS1-207ENST00000524045 987 ntTSL 3 BASIC5.36□□□□□ -1.55
VPS4AQ9UN37 MTATP6P15-201ENST00000527233 835 ntBASIC5.36□□□□□ -1.55
VPS4AQ9UN37 MIR100HG-213ENST00000531470 560 ntTSL 4 BASIC5.36□□□□□ -1.55
VPS4AQ9UN37 AC063948.1-201ENST00000547360 379 ntTSL 5 BASIC5.36□□□□□ -1.55
VPS4AQ9UN37 TWF1-207ENST00000548315 1170 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
VPS4AQ9UN37 HAGLR-211ENST00000549329 609 ntTSL 4 BASIC5.36□□□□□ -1.55
VPS4AQ9UN37 HMGN2P6-201ENST00000551091 273 ntBASIC5.36□□□□□ -1.55
VPS4AQ9UN37 MTND3P12-201ENST00000559068 328 ntBASIC5.36□□□□□ -1.55
VPS4AQ9UN37 AL109741.3-201ENST00000561748 592 ntBASIC5.36□□□□□ -1.55
VPS4AQ9UN37 LINC02563-201ENST00000579474 277 ntTSL 3 BASIC5.36□□□□□ -1.55
VPS4AQ9UN37 AC007993.3-202ENST00000585329 725 ntTSL 5 BASIC5.36□□□□□ -1.55
VPS4AQ9UN37 AL512329.2-201ENST00000607350 548 ntBASIC5.36□□□□□ -1.55
VPS4AQ9UN37 C1orf185-204ENST00000612209 899 ntAPPRIS ALT2 TSL 2 BASIC5.36□□□□□ -1.55
VPS4AQ9UN37 AL121890.3-201ENST00000618494 516 ntBASIC5.36□□□□□ -1.55
VPS4AQ9UN37 AC017104.5-201ENST00000637647 639 ntBASIC5.36□□□□□ -1.55
VPS4AQ9UN37 DDX58-201ENST00000379868 4089 ntTSL 5 BASIC5.36□□□□□ -1.55
VPS4AQ9UN37 MT-RNR2-201ENST00000387347 1559 ntBASIC5.36□□□□□ -1.55
VPS4AQ9UN37 AC016705.1-201ENST00000548231 1891 ntTSL 5 BASIC5.36□□□□□ -1.55
VPS4AQ9UN37 TET2-203ENST00000380013 9679 ntAPPRIS P2 TSL 5 BASIC5.36□□□□□ -1.55
VPS4AQ9UN37 MYBPC1-216ENST00000550270 3426 ntAPPRIS ALT2 TSL 5 BASIC5.36□□□□□ -1.55
VPS4AQ9UN37 BMPR2-204ENST00000638587 3443 ntTSL 5 BASIC5.36□□□□□ -1.55
VPS4AQ9UN37 ZNF780A-204ENST00000455521 3600 ntAPPRIS ALT2 TSL 5 BASIC5.36□□□□□ -1.55
VPS4AQ9UN37 KBTBD8-201ENST00000417314 4680 ntAPPRIS P1 TSL 2 BASIC5.36□□□□□ -1.55
VPS4AQ9UN37 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC5.36□□□□□ -1.55
VPS4AQ9UN37 AC083899.1-201ENST00000454465 3819 ntBASIC5.35□□□□□ -1.55
VPS4AQ9UN37 LMO3-209ENST00000447609 3365 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
VPS4AQ9UN37 LMOD2-202ENST00000458573 2346 ntAPPRIS P1 TSL 2 BASIC5.35□□□□□ -1.55
VPS4AQ9UN37 YPEL5-204ENST00000402003 2197 ntAPPRIS P1 TSL 2 BASIC5.35□□□□□ -1.55
VPS4AQ9UN37 ELF1-204ENST00000625359 2032 ntTSL 2 BASIC5.35□□□□□ -1.55
VPS4AQ9UN37 AFP-201ENST00000226359 1914 ntTSL 5 BASIC5.35□□□□□ -1.55
VPS4AQ9UN37 PABPC1P6-201ENST00000445594 1829 ntBASIC5.35□□□□□ -1.55
VPS4AQ9UN37 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
VPS4AQ9UN37 AC245100.4-204ENST00000635587 1555 ntTSL 5 BASIC5.35□□□□□ -1.55
VPS4AQ9UN37 MRRF-208ENST00000394315 1501 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
VPS4AQ9UN37 RFC3-202ENST00000434425 1461 ntTSL 5 BASIC5.35□□□□□ -1.55
VPS4AQ9UN37 ADH4-207ENST00000505590 1400 ntTSL 5 BASIC5.35□□□□□ -1.55
VPS4AQ9UN37 PHACTR2P1-201ENST00000605639 1414 ntBASIC5.35□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 120.8 ms