Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 TRPM3-208ENST00000377105 5957 ntAPPRIS ALT2 TSL 5 BASIC6.33□□□□□ -1.4
COL8A1P27658 ABCB4-203ENST00000359206 3923 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
COL8A1P27658 NSUN4-208ENST00000498008 3867 ntTSL 2 BASIC6.33□□□□□ -1.4
COL8A1P27658 CD86-209ENST00000493101 1572 ntTSL 2 BASIC6.33□□□□□ -1.4
COL8A1P27658 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC6.33□□□□□ -1.4
COL8A1P27658 NACAP2-201ENST00000318548 624 ntBASIC6.33□□□□□ -1.4
COL8A1P27658 RPL7P26-201ENST00000333817 754 ntBASIC6.33□□□□□ -1.4
COL8A1P27658 KIF16B-202ENST00000355755 606 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
COL8A1P27658 RN7SKP55-201ENST00000364888 307 ntBASIC6.33□□□□□ -1.4
COL8A1P27658 RNA5SP279-201ENST00000365513 117 ntBASIC6.33□□□□□ -1.4
COL8A1P27658 NUDT5-203ENST00000378940 1126 ntTSL 5 BASIC6.33□□□□□ -1.4
COL8A1P27658 OR51A2-201ENST00000380371 942 ntAPPRIS P1 BASIC6.33□□□□□ -1.4
COL8A1P27658 MIR217-201ENST00000384817 110 ntBASIC6.33□□□□□ -1.4
COL8A1P27658 SNORD115.1-201ENST00000391109 76 ntBASIC6.33□□□□□ -1.4
COL8A1P27658 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
COL8A1P27658 RN7SKP91-201ENST00000410852 288 ntBASIC6.33□□□□□ -1.4
COL8A1P27658 RN7SKP247-201ENST00000411094 308 ntBASIC6.33□□□□□ -1.4
COL8A1P27658 EEF1GP7-201ENST00000422983 703 ntBASIC6.33□□□□□ -1.4
COL8A1P27658 VDAC1P2-201ENST00000423609 850 ntBASIC6.33□□□□□ -1.4
COL8A1P27658 Z93242.1-201ENST00000427102 353 ntBASIC6.33□□□□□ -1.4
COL8A1P27658 AL591178.2-201ENST00000429191 461 ntTSL 3 BASIC6.33□□□□□ -1.4
COL8A1P27658 SKP1P3-201ENST00000429280 487 ntBASIC6.33□□□□□ -1.4
COL8A1P27658 AC097359.1-201ENST00000447946 463 ntBASIC6.33□□□□□ -1.4
COL8A1P27658 LIX1L-AS1-207ENST00000448561 347 ntTSL 3 BASIC6.33□□□□□ -1.4
COL8A1P27658 NPM1P39-201ENST00000449818 867 ntBASIC6.33□□□□□ -1.4
COL8A1P27658 HMGB3P22-202ENST00000451823 572 ntBASIC6.33□□□□□ -1.4
COL8A1P27658 RNU7-157P-201ENST00000459600 66 ntBASIC6.33□□□□□ -1.4
COL8A1P27658 RNU6-1143P-201ENST00000516125 104 ntBASIC6.33□□□□□ -1.4
COL8A1P27658 RNU6ATAC39P-201ENST00000516309 149 ntBASIC6.33□□□□□ -1.4
COL8A1P27658 RNA5SP287-201ENST00000516358 103 ntBASIC6.33□□□□□ -1.4
COL8A1P27658 RN7SKP233-201ENST00000517005 110 ntBASIC6.33□□□□□ -1.4
COL8A1P27658 AC105150.1-201ENST00000518011 551 ntTSL 3 BASIC6.33□□□□□ -1.4
COL8A1P27658 IGLVIV-64-201ENST00000518581 301 ntBASIC6.33□□□□□ -1.4
COL8A1P27658 BAALC-AS1-208ENST00000523614 582 ntTSL 5 BASIC6.33□□□□□ -1.4
COL8A1P27658 AP000827.1-201ENST00000527814 258 ntBASIC6.33□□□□□ -1.4
COL8A1P27658 AP002812.4-201ENST00000532139 286 ntBASIC6.33□□□□□ -1.4
COL8A1P27658 AP004609.2-201ENST00000532177 190 ntBASIC6.33□□□□□ -1.4
COL8A1P27658 LINC02423-202ENST00000542577 460 ntTSL 3 BASIC6.33□□□□□ -1.4
COL8A1P27658 AC024257.1-201ENST00000547523 566 ntTSL 4 BASIC6.33□□□□□ -1.4
COL8A1P27658 AC079598.4-201ENST00000549647 265 ntBASIC6.33□□□□□ -1.4
COL8A1P27658 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC6.33□□□□□ -1.4
COL8A1P27658 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC6.33□□□□□ -1.4
COL8A1P27658 RPSAP66-201ENST00000592196 606 ntBASIC6.33□□□□□ -1.4
COL8A1P27658 Z98949.1-202ENST00000600211 1282 ntTSL 5 BASIC6.33□□□□□ -1.4
COL8A1P27658 AC115621.1-201ENST00000604653 858 ntBASIC6.33□□□□□ -1.4
COL8A1P27658 APOOP1-201ENST00000604695 592 ntBASIC6.33□□□□□ -1.4
COL8A1P27658 AC097641.3-201ENST00000613523 464 ntBASIC6.33□□□□□ -1.4
COL8A1P27658 AC011815.3-201ENST00000624194 473 ntBASIC6.33□□□□□ -1.4
COL8A1P27658 AL359757.2-201ENST00000624309 274 ntBASIC6.33□□□□□ -1.4
COL8A1P27658 AD000090.1-201ENST00000638356 494 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
COL8A1P27658 CTAGE1-201ENST00000391403 4313 ntAPPRIS P2 BASIC6.33□□□□□ -1.4
COL8A1P27658 LINC02447-201ENST00000499242 1500 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
COL8A1P27658 FOXP2-201ENST00000350908 2638 ntAPPRIS P2 TSL 1 (best) BASIC6.33□□□□□ -1.4
COL8A1P27658 LINC01197-205ENST00000614853 1774 ntTSL 3 BASIC6.33□□□□□ -1.4
COL8A1P27658 AC026398.1-201ENST00000413683 3126 ntAPPRIS P1 TSL 2 BASIC6.33□□□□□ -1.4
COL8A1P27658 FOPNL-206ENST00000573968 2039 ntTSL 2 BASIC6.33□□□□□ -1.4
COL8A1P27658 AC069222.1-201ENST00000608028 3360 ntBASIC6.33□□□□□ -1.4
COL8A1P27658 ABCA9-201ENST00000340001 6514 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
COL8A1P27658 GCSAM-201ENST00000308910 3336 ntAPPRIS P3 TSL 1 (best) BASIC6.33□□□□□ -1.4
COL8A1P27658 NF1P2-201ENST00000556855 2505 ntBASIC6.33□□□□□ -1.4
COL8A1P27658 DDX46-201ENST00000354283 3821 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
COL8A1P27658 DGKB-205ENST00000406247 3257 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
COL8A1P27658 LINC01206-202ENST00000474045 2240 ntTSL 5 BASIC6.33□□□□□ -1.4
COL8A1P27658 NCOA4-204ENST00000581486 3549 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
COL8A1P27658 KCNIP4-202ENST00000382148 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC6.33□□□□□ -1.4
COL8A1P27658 TDRD3-209ENST00000621840 2497 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
COL8A1P27658 PABPC5-201ENST00000312600 3221 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
COL8A1P27658 PTER-203ENST00000423462 3212 ntTSL 3 BASIC6.33□□□□□ -1.4
COL8A1P27658 SENP8-202ENST00000542035 1672 ntAPPRIS P1 TSL 2 BASIC6.33□□□□□ -1.4
COL8A1P27658 ALPK2-201ENST00000361673 7303 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
COL8A1P27658 OR2L13-202ENST00000641714 1948 ntAPPRIS P1 BASIC6.33□□□□□ -1.4
COL8A1P27658 SLC8A3-208ENST00000533541 3409 ntTSL 2 BASIC6.32□□□□□ -1.4
COL8A1P27658 NFATC3-201ENST00000329524 6144 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
COL8A1P27658 SLC16A4-203ENST00000437429 2372 ntTSL 2 BASIC6.32□□□□□ -1.4
COL8A1P27658 TTLL5-207ENST00000554510 2624 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
COL8A1P27658 FZD3-204ENST00000537916 13740 ntAPPRIS P1 TSL 2 BASIC6.32□□□□□ -1.4
COL8A1P27658 GOSR2-221ENST00000638892 3808 ntTSL 5 BASIC6.32□□□□□ -1.4
COL8A1P27658 CR1-204ENST00000367052 7469 ntTSL 5 BASIC6.32□□□□□ -1.4
COL8A1P27658 CR1-205ENST00000367053 7469 ntTSL 5 BASIC6.32□□□□□ -1.4
COL8A1P27658 ZNF540-206ENST00000589117 2349 ntAPPRIS ALT2 TSL 1 (best) BASIC6.32□□□□□ -1.4
COL8A1P27658 KIAA0040-202ENST00000444639 4494 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
COL8A1P27658 OR4Q2-201ENST00000541415 2778 ntAPPRIS P5 BASIC6.32□□□□□ -1.4
COL8A1P27658 CD46-203ENST00000354848 3233 ntAPPRIS ALT2 TSL 1 (best) BASIC6.32□□□□□ -1.4
COL8A1P27658 ZNF585B-203ENST00000527838 2732 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
COL8A1P27658 RNF217-202ENST00000368414 1771 ntTSL 2 BASIC6.32□□□□□ -1.4
COL8A1P27658 MTND5P6-201ENST00000422338 1798 ntBASIC6.32□□□□□ -1.4
COL8A1P27658 LINC02209-201ENST00000521245 2651 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
COL8A1P27658 CDHR3-201ENST00000317716 3813 ntAPPRIS P3 TSL 1 (best) BASIC6.32□□□□□ -1.4
COL8A1P27658 LINC01699-201ENST00000319701 259 ntTSL 2 BASIC6.32□□□□□ -1.4
COL8A1P27658 RNA5SP308-201ENST00000362532 115 ntBASIC6.32□□□□□ -1.4
COL8A1P27658 Y_RNA.291-201ENST00000364886 113 ntBASIC6.32□□□□□ -1.4
COL8A1P27658 RNU4-20P-201ENST00000365601 151 ntBASIC6.32□□□□□ -1.4
COL8A1P27658 MDM4-202ENST00000367180 547 ntTSL 3 BASIC6.32□□□□□ -1.4
COL8A1P27658 ZRSR2-202ENST00000380308 744 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
COL8A1P27658 RNU6-1158P-201ENST00000391167 107 ntBASIC6.32□□□□□ -1.4
COL8A1P27658 KRTAP3-1-201ENST00000391588 594 ntAPPRIS P1 BASIC6.32□□□□□ -1.4
COL8A1P27658 FCAR-205ENST00000391723 754 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
COL8A1P27658 SDHC-203ENST00000392169 369 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
COL8A1P27658 RPL23AP47-201ENST00000408017 460 ntBASIC6.32□□□□□ -1.4
COL8A1P27658 AC068535.1-201ENST00000416008 471 ntTSL 3 BASIC6.32□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 98.5 ms