Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 TRAV19-201ENST00000390447 467 ntAPPRIS P1 BASIC8.09□□□□□ -1.11
RC3H1Q5TC82 KRTAP3-2-201ENST00000391587 702 ntAPPRIS P1 BASIC8.09□□□□□ -1.11
RC3H1Q5TC82 CYCSP45-201ENST00000402289 315 ntBASIC8.09□□□□□ -1.11
RC3H1Q5TC82 AC011754.1-201ENST00000415201 491 ntTSL 5 BASIC8.09□□□□□ -1.11
RC3H1Q5TC82 NUP35P1-201ENST00000422734 947 ntBASIC8.09□□□□□ -1.11
RC3H1Q5TC82 MTCO1P3-201ENST00000429327 192 ntBASIC8.09□□□□□ -1.11
RC3H1Q5TC82 CLUHP1-201ENST00000435012 1190 ntBASIC8.09□□□□□ -1.11
RC3H1Q5TC82 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC8.09□□□□□ -1.11
RC3H1Q5TC82 LINC01891-201ENST00000439798 538 ntTSL 4 BASIC8.09□□□□□ -1.11
RC3H1Q5TC82 AL035530.1-201ENST00000446887 331 ntTSL 3 BASIC8.09□□□□□ -1.11
RC3H1Q5TC82 AC002553.3-201ENST00000453002 341 ntBASIC8.09□□□□□ -1.11
RC3H1Q5TC82 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC8.09□□□□□ -1.11
RC3H1Q5TC82 AC074386.1-201ENST00000476560 767 ntBASIC8.09□□□□□ -1.11
RC3H1Q5TC82 AC022447.3-201ENST00000506865 495 ntBASIC8.09□□□□□ -1.11
RC3H1Q5TC82 AC106800.2-201ENST00000514009 1103 ntBASIC8.09□□□□□ -1.11
RC3H1Q5TC82 Y_RNA.667-201ENST00000516212 107 ntBASIC8.09□□□□□ -1.11
RC3H1Q5TC82 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC8.09□□□□□ -1.11
RC3H1Q5TC82 AC007527.1-201ENST00000535528 313 ntTSL 2 BASIC8.09□□□□□ -1.11
RC3H1Q5TC82 AC022075.2-201ENST00000535911 562 ntTSL 4 BASIC8.09□□□□□ -1.11
RC3H1Q5TC82 AC078814.3-201ENST00000553036 491 ntBASIC8.09□□□□□ -1.11
RC3H1Q5TC82 AC007601.2-201ENST00000566957 502 ntTSL 3 BASIC8.09□□□□□ -1.11
RC3H1Q5TC82 AL163952.1-202ENST00000569625 600 ntBASIC8.09□□□□□ -1.11
RC3H1Q5TC82 AC130371.1-201ENST00000577023 230 ntTSL 5 BASIC8.09□□□□□ -1.11
RC3H1Q5TC82 AC005695.2-201ENST00000579641 259 ntTSL 3 BASIC8.09□□□□□ -1.11
RC3H1Q5TC82 AC127024.4-201ENST00000585212 308 ntTSL 5 BASIC8.09□□□□□ -1.11
RC3H1Q5TC82 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC8.09□□□□□ -1.11
RC3H1Q5TC82 AL161729.4-201ENST00000604650 476 ntBASIC8.09□□□□□ -1.11
RC3H1Q5TC82 AC005962.2-201ENST00000611427 652 ntBASIC8.09□□□□□ -1.11
RC3H1Q5TC82 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC8.09□□□□□ -1.11
RC3H1Q5TC82 IL16-204ENST00000394660 9616 ntAPPRIS ALT2 TSL 2 BASIC8.09□□□□□ -1.11
RC3H1Q5TC82 TRIM49B-202ENST00000622138 2162 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
RC3H1Q5TC82 OSGEPL1-207ENST00000522700 1779 ntAPPRIS P1 TSL 1 (best) BASIC8.09□□□□□ -1.11
RC3H1Q5TC82 AL034370.1-201ENST00000397254 1590 ntBASIC8.09□□□□□ -1.11
RC3H1Q5TC82 MRPS27-202ENST00000457646 2628 ntTSL 2 BASIC8.09□□□□□ -1.11
RC3H1Q5TC82 ALG13-224ENST00000610588 4175 ntTSL 2 BASIC8.09□□□□□ -1.11
RC3H1Q5TC82 CHRM3-AS2-201ENST00000427859 2431 ntTSL 1 (best) BASIC8.09□□□□□ -1.11
RC3H1Q5TC82 KAT6B-202ENST00000372711 7560 ntAPPRIS ALT2 TSL 1 (best) BASIC8.09□□□□□ -1.12
RC3H1Q5TC82 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC8.09□□□□□ -1.12
RC3H1Q5TC82 GAGE1-204ENST00000619375 2873 ntAPPRIS P1 TSL 5 BASIC8.08□□□□□ -1.12
RC3H1Q5TC82 PTPRR-202ENST00000342084 2037 ntAPPRIS ALT2 TSL 2 BASIC8.08□□□□□ -1.12
RC3H1Q5TC82 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC8.08□□□□□ -1.12
RC3H1Q5TC82 KCNJ1-203ENST00000392664 1674 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
RC3H1Q5TC82 TRIM5-203ENST00000396847 3170 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
RC3H1Q5TC82 AC009166.2-201ENST00000624410 2833 ntBASIC8.08□□□□□ -1.12
RC3H1Q5TC82 AC044839.1-206ENST00000635559 1324 ntTSL 5 BASIC8.08□□□□□ -1.12
RC3H1Q5TC82 STAG1-202ENST00000383202 6055 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
RC3H1Q5TC82 GABPB2-202ENST00000368918 8964 ntAPPRIS P3 TSL 1 (best) BASIC8.08□□□□□ -1.12
RC3H1Q5TC82 AC073055.1-201ENST00000456901 1621 ntBASIC8.08□□□□□ -1.12
RC3H1Q5TC82 GOLGA6L6-201ENST00000619213 4013 ntAPPRIS P1 TSL 5 BASIC8.08□□□□□ -1.12
RC3H1Q5TC82 RNF145-201ENST00000274542 3364 ntTSL 2 BASIC8.08□□□□□ -1.12
RC3H1Q5TC82 LGALS13-201ENST00000221797 602 ntAPPRIS P2 TSL 1 (best) BASIC8.08□□□□□ -1.12
RC3H1Q5TC82 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
RC3H1Q5TC82 WFDC11-202ENST00000356562 642 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
RC3H1Q5TC82 SNORA51.2-201ENST00000364595 132 ntBASIC8.08□□□□□ -1.12
RC3H1Q5TC82 SNORA40.3-201ENST00000390964 122 ntBASIC8.08□□□□□ -1.12
RC3H1Q5TC82 OR7E101P-201ENST00000400428 513 ntBASIC8.08□□□□□ -1.12
RC3H1Q5TC82 NFIA-AS2-202ENST00000421455 768 ntTSL 4 BASIC8.08□□□□□ -1.12
RC3H1Q5TC82 BRWD1P3-201ENST00000428816 390 ntBASIC8.08□□□□□ -1.12
RC3H1Q5TC82 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC8.08□□□□□ -1.12
RC3H1Q5TC82 AL096678.1-201ENST00000438877 472 ntTSL 3 BASIC8.08□□□□□ -1.12
RC3H1Q5TC82 DNAJC19P5-201ENST00000443295 316 ntBASIC8.08□□□□□ -1.12
RC3H1Q5TC82 AC079776.3-201ENST00000450665 370 ntBASIC8.08□□□□□ -1.12
RC3H1Q5TC82 HMGB1P5-202ENST00000451497 985 ntBASIC8.08□□□□□ -1.12
RC3H1Q5TC82 AC117386.1-201ENST00000474444 606 ntTSL 4 BASIC8.08□□□□□ -1.12
RC3H1Q5TC82 RPS4XP14-201ENST00000493072 781 ntBASIC8.08□□□□□ -1.12
RC3H1Q5TC82 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC8.08□□□□□ -1.12
RC3H1Q5TC82 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC8.08□□□□□ -1.12
RC3H1Q5TC82 RNA5SP438-201ENST00000516561 112 ntBASIC8.08□□□□□ -1.12
RC3H1Q5TC82 MTCO2P4-201ENST00000517968 247 ntBASIC8.08□□□□□ -1.12
RC3H1Q5TC82 AC016134.1-201ENST00000565259 701 ntTSL 3 BASIC8.08□□□□□ -1.12
RC3H1Q5TC82 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC8.08□□□□□ -1.12
RC3H1Q5TC82 AL132655.1-201ENST00000601795 1153 ntTSL 3 BASIC8.08□□□□□ -1.12
RC3H1Q5TC82 AL139286.1-201ENST00000604465 483 ntBASIC8.08□□□□□ -1.12
RC3H1Q5TC82 DAOA-AS1_2.2-201ENST00000610818 204 ntBASIC8.08□□□□□ -1.12
RC3H1Q5TC82 AC022467.1-201ENST00000614738 749 ntBASIC8.08□□□□□ -1.12
RC3H1Q5TC82 AC069209.1-201ENST00000619282 651 ntBASIC8.08□□□□□ -1.12
RC3H1Q5TC82 AC006065.6-201ENST00000625201 545 ntBASIC8.08□□□□□ -1.12
RC3H1Q5TC82 AC073488.3-201ENST00000631611 778 ntBASIC8.08□□□□□ -1.12
RC3H1Q5TC82 FGFR1OP-202ENST00000366847 14166 ntAPPRIS P4 TSL 1 (best) BASIC8.08□□□□□ -1.12
RC3H1Q5TC82 ZSCAN4-201ENST00000318203 2246 ntAPPRIS P1 TSL 2 BASIC8.08□□□□□ -1.12
RC3H1Q5TC82 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC8.08□□□□□ -1.12
RC3H1Q5TC82 TGFBR3-202ENST00000370399 4550 ntAPPRIS ALT1 TSL 1 (best) BASIC8.08□□□□□ -1.12
RC3H1Q5TC82 PSMC6-219ENST00000612399 1590 ntAPPRIS P2 TSL 1 (best) BASIC8.08□□□□□ -1.12
RC3H1Q5TC82 LCP1-202ENST00000398576 3944 ntAPPRIS P1 TSL 5 BASIC8.08□□□□□ -1.12
RC3H1Q5TC82 GARNL3-205ENST00000435213 3599 ntTSL 2 BASIC8.08□□□□□ -1.12
RC3H1Q5TC82 TDRD3-209ENST00000621840 2497 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
RC3H1Q5TC82 SF3B3-201ENST00000302516 9720 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
RC3H1Q5TC82 NLRC4-202ENST00000360906 3359 ntAPPRIS P1 TSL 1 (best) BASIC8.08□□□□□ -1.12
RC3H1Q5TC82 HSPA8P17-201ENST00000427029 1382 ntBASIC8.08□□□□□ -1.12
RC3H1Q5TC82 CASC19-228ENST00000641414 1684 ntBASIC8.08□□□□□ -1.12
RC3H1Q5TC82 MITF-206ENST00000394351 1956 ntAPPRIS P3 TSL 1 (best) BASIC8.08□□□□□ -1.12
RC3H1Q5TC82 PPP1R2P3-201ENST00000522232 1991 ntAPPRIS P1 BASIC8.08□□□□□ -1.12
RC3H1Q5TC82 DIAPH3-206ENST00000465066 2735 ntTSL 1 (best) BASIC8.08□□□□□ -1.12
RC3H1Q5TC82 CD46-204ENST00000357714 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC8.08□□□□□ -1.12
RC3H1Q5TC82 KIAA0586-201ENST00000261244 4807 ntAPPRIS P3 TSL 1 (best) BASIC8.08□□□□□ -1.12
RC3H1Q5TC82 RAP1GDS1-204ENST00000408900 1942 ntTSL 1 (best) BASIC8.07□□□□□ -1.12
RC3H1Q5TC82 PIH1D3-203ENST00000535523 1926 ntAPPRIS P1 TSL 5 BASIC8.07□□□□□ -1.12
RC3H1Q5TC82 EMB-205ENST00000514111 1475 ntAPPRIS ALT2 TSL 2 BASIC8.07□□□□□ -1.12
RC3H1Q5TC82 AC119674.1-204ENST00000641348 1343 ntBASIC8.07□□□□□ -1.12
RC3H1Q5TC82 OR7C1-205ENST00000642030 11778 ntAPPRIS P1 BASIC8.07□□□□□ -1.12
Retrieved 100 of 98,524 protein–RNA pairs in 75.2 ms