Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AC046144.1-201ENST00000478559 1853 ntBASIC6.64□□□□□ -1.35
LIG3P49916 IL6ST-212ENST00000522633 1878 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
LIG3P49916 KIAA0895-201ENST00000297063 4153 ntTSL 1 (best) BASIC6.64□□□□□ -1.35
LIG3P49916 ASPN-201ENST00000375543 2237 ntTSL 2 BASIC6.64□□□□□ -1.35
LIG3P49916 RIC3-202ENST00000335425 5223 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
LIG3P49916 FGF1-202ENST00000359370 3660 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
LIG3P49916 MPHOSPH9-220ENST00000606320 6351 ntAPPRIS P2 TSL 5 BASIC6.63□□□□□ -1.35
LIG3P49916 RYR3-202ENST00000415757 15557 ntAPPRIS ALT2 TSL 2 BASIC6.63□□□□□ -1.35
LIG3P49916 UBE2D2-201ENST00000253815 444 ntAPPRIS ALT1 TSL 5 BASIC6.63□□□□□ -1.35
LIG3P49916 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC6.63□□□□□ -1.35
LIG3P49916 BPY2-201ENST00000331070 1206 ntAPPRIS P5 TSL 1 (best) BASIC6.63□□□□□ -1.35
LIG3P49916 PTK2-201ENST00000340930 4414 ntTSL 2 BASIC6.63□□□□□ -1.35
LIG3P49916 VTRNA3-1P-201ENST00000362552 102 ntBASIC6.63□□□□□ -1.35
LIG3P49916 RNU6-374P-201ENST00000364146 108 ntBASIC6.63□□□□□ -1.35
LIG3P49916 Y_RNA.248-201ENST00000364501 109 ntBASIC6.63□□□□□ -1.35
LIG3P49916 RNU5E-4P-201ENST00000364931 120 ntBASIC6.63□□□□□ -1.35
LIG3P49916 PRR9-201ENST00000368744 1229 ntAPPRIS P1 TSL 5 BASIC6.63□□□□□ -1.35
LIG3P49916 PRB3-201ENST00000381842 1091 ntAPPRIS ALT2 TSL 5 BASIC6.63□□□□□ -1.35
LIG3P49916 BPY2C-201ENST00000382287 1206 ntAPPRIS P5 TSL 1 (best) BASIC6.63□□□□□ -1.35
LIG3P49916 BPY2B-201ENST00000382392 1206 ntAPPRIS P5 TSL 1 (best) BASIC6.63□□□□□ -1.35
LIG3P49916 TRAV13-1-201ENST00000390436 360 ntAPPRIS P1 BASIC6.63□□□□□ -1.35
LIG3P49916 CAV1-203ENST00000393468 845 ntAPPRIS ALT1 TSL 1 (best) BASIC6.63□□□□□ -1.35
LIG3P49916 ABCA12-203ENST00000412081 485 ntTSL 2 BASIC6.63□□□□□ -1.35
LIG3P49916 AL929472.1-201ENST00000417484 429 ntBASIC6.63□□□□□ -1.35
LIG3P49916 LINC01794-201ENST00000420187 549 ntTSL 4 BASIC6.63□□□□□ -1.35
LIG3P49916 AC016582.1-203ENST00000433142 502 ntTSL 3 BASIC6.63□□□□□ -1.35
LIG3P49916 AP000295.1-201ENST00000433395 1000 ntAPPRIS P1 TSL 5 BASIC6.63□□□□□ -1.35
LIG3P49916 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC6.63□□□□□ -1.35
LIG3P49916 AL121917.1-201ENST00000441270 893 ntTSL 5 BASIC6.63□□□□□ -1.35
LIG3P49916 AC245291.3-201ENST00000443400 292 ntBASIC6.63□□□□□ -1.35
LIG3P49916 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC6.63□□□□□ -1.35
LIG3P49916 SH2D1A-203ENST00000477673 461 ntTSL 2 BASIC6.63□□□□□ -1.35
LIG3P49916 RN7SL413P-201ENST00000482700 297 ntBASIC6.63□□□□□ -1.35
LIG3P49916 AC005823.2-201ENST00000505978 650 ntTSL 3 BASIC6.63□□□□□ -1.35
LIG3P49916 AC093870.1-201ENST00000506837 213 ntBASIC6.63□□□□□ -1.35
LIG3P49916 AC099520.1-203ENST00000506976 464 ntTSL 3 BASIC6.63□□□□□ -1.35
LIG3P49916 IGBP1P5-201ENST00000507524 1000 ntBASIC6.63□□□□□ -1.35
LIG3P49916 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC6.63□□□□□ -1.35
LIG3P49916 AC008957.1-203ENST00000508745 589 ntTSL 3 BASIC6.63□□□□□ -1.35
LIG3P49916 AC138832.1-201ENST00000522871 556 ntBASIC6.63□□□□□ -1.35
LIG3P49916 LINC02420-201ENST00000543387 741 ntTSL 5 BASIC6.63□□□□□ -1.35
LIG3P49916 SLC2A14-218ENST00000543909 4125 ntAPPRIS P3 TSL 1 (best) BASIC6.63□□□□□ -1.35
LIG3P49916 AC026956.1-201ENST00000558741 396 ntBASIC6.63□□□□□ -1.35
LIG3P49916 AC023813.1-201ENST00000565055 306 ntTSL 5 BASIC6.63□□□□□ -1.35
LIG3P49916 AC004656.1-201ENST00000568479 4951 ntBASIC6.63□□□□□ -1.35
LIG3P49916 AC106785.4-201ENST00000569492 412 ntBASIC6.63□□□□□ -1.35
LIG3P49916 ANKRD36BP2-206ENST00000575193 1245 ntBASIC6.63□□□□□ -1.35
LIG3P49916 AC104996.1-201ENST00000583250 591 ntTSL 5 BASIC6.63□□□□□ -1.35
LIG3P49916 AC005180.2-201ENST00000585620 562 ntTSL 3 BASIC6.63□□□□□ -1.35
LIG3P49916 AC008794.1-201ENST00000593063 560 ntTSL 4 BASIC6.63□□□□□ -1.35
LIG3P49916 INTS6-AS1-210ENST00000595424 301 ntTSL 5 BASIC6.63□□□□□ -1.35
LIG3P49916 SLC1A3-215ENST00000612708 3832 ntTSL 5 BASIC6.63□□□□□ -1.35
LIG3P49916 MIR6889-201ENST00000613185 59 ntBASIC6.63□□□□□ -1.35
LIG3P49916 RPL36A-210ENST00000614077 881 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
LIG3P49916 AC004241.2-201ENST00000614562 444 ntBASIC6.63□□□□□ -1.35
LIG3P49916 Xist_exon4.1-201ENST00000615964 126 ntBASIC6.63□□□□□ -1.35
LIG3P49916 AC138932.5-201ENST00000617759 563 ntBASIC6.63□□□□□ -1.35
LIG3P49916 FP236315.3-201ENST00000623587 307 ntTSL 2 BASIC6.63□□□□□ -1.35
LIG3P49916 OR8G5-202ENST00000641707 1156 ntAPPRIS P1 BASIC6.63□□□□□ -1.35
LIG3P49916 PRR14L-201ENST00000327423 10826 ntAPPRIS P2 TSL 5 BASIC6.63□□□□□ -1.35
LIG3P49916 SV2B-201ENST00000330276 11202 ntAPPRIS P1 TSL 1 (best) BASIC6.63□□□□□ -1.35
LIG3P49916 AC005674.2-201ENST00000561486 3510 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
LIG3P49916 PRKDC-201ENST00000314191 13509 ntAPPRIS P4 TSL 1 (best) BASIC6.63□□□□□ -1.35
LIG3P49916 CLEC12B-202ENST00000396502 3029 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
LIG3P49916 NBPF12-204ENST00000613714 2701 ntTSL 5 BASIC6.63□□□□□ -1.35
LIG3P49916 RGPD2-203ENST00000638730 5306 ntAPPRIS ALT2 TSL 5 BASIC6.63□□□□□ -1.35
LIG3P49916 MACF1-232ENST00000567887 24319 ntAPPRIS P5 TSL 5 BASIC6.62□□□□□ -1.35
LIG3P49916 RFX3-212ENST00000617270 9253 ntAPPRIS P1 TSL 2 BASIC6.62□□□□□ -1.35
LIG3P49916 SPATA6-202ENST00000371843 2297 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
LIG3P49916 TEX9-203ENST00000558083 4440 ntTSL 2 BASIC6.62□□□□□ -1.35
LIG3P49916 AC008505.1-201ENST00000637582 2025 ntTSL 5 BASIC6.62□□□□□ -1.35
LIG3P49916 NBPF26-201ENST00000609741 3671 ntTSL 5 BASIC6.62□□□□□ -1.35
LIG3P49916 CR383658.2-201ENST00000547576 1525 ntBASIC6.62□□□□□ -1.35
LIG3P49916 CFH-201ENST00000359637 1454 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
LIG3P49916 EXD1-201ENST00000314992 2942 ntAPPRIS P3 TSL 1 (best) BASIC6.62□□□□□ -1.35
LIG3P49916 KIF20A-205ENST00000508792 2935 ntTSL 2 BASIC6.62□□□□□ -1.35
LIG3P49916 LZTFL1-201ENST00000296135 4073 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
LIG3P49916 PYGO1-202ENST00000563719 2653 ntAPPRIS P1 TSL 5 BASIC6.62□□□□□ -1.35
LIG3P49916 LINC01440-201ENST00000416190 1340 ntTSL 5 BASIC6.62□□□□□ -1.35
LIG3P49916 NTS-201ENST00000256010 1237 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
LIG3P49916 STARD6-201ENST00000307844 663 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
LIG3P49916 ARGFX-201ENST00000334384 992 ntAPPRIS P1 TSL 3 BASIC6.62□□□□□ -1.35
LIG3P49916 IGKV7-3-201ENST00000357453 298 ntBASIC6.62□□□□□ -1.35
LIG3P49916 SNORA64.3-201ENST00000365647 134 ntBASIC6.62□□□□□ -1.35
LIG3P49916 IGHV6-1-201ENST00000390593 415 ntAPPRIS P1 BASIC6.62□□□□□ -1.35
LIG3P49916 PTPN20-208ENST00000395727 790 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
LIG3P49916 AL133260.1-201ENST00000405720 405 ntBASIC6.62□□□□□ -1.35
LIG3P49916 RPL23AP47-201ENST00000408017 460 ntBASIC6.62□□□□□ -1.35
LIG3P49916 LSM5-205ENST00000409952 687 ntTSL 4 BASIC6.62□□□□□ -1.35
LIG3P49916 RN7SKP222-201ENST00000410651 315 ntBASIC6.62□□□□□ -1.35
LIG3P49916 LINC02020-202ENST00000421006 575 ntTSL 4 BASIC6.62□□□□□ -1.35
LIG3P49916 AC107057.1-201ENST00000425763 319 ntTSL 3 BASIC6.62□□□□□ -1.35
LIG3P49916 PRUNEP1-201ENST00000425846 705 ntBASIC6.62□□□□□ -1.35
LIG3P49916 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC6.62□□□□□ -1.35
LIG3P49916 SKP1P3-201ENST00000429280 487 ntBASIC6.62□□□□□ -1.35
LIG3P49916 SLC36A1-202ENST00000429484 977 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
LIG3P49916 AL645939.3-201ENST00000435408 225 ntBASIC6.62□□□□□ -1.35
LIG3P49916 RPL32-206ENST00000435983 620 ntAPPRIS P1 TSL 2 BASIC6.62□□□□□ -1.35
LIG3P49916 UBE2V1P5-201ENST00000440070 405 ntBASIC6.62□□□□□ -1.35
LIG3P49916 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC6.62□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 363.5 ms