Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 NANOGP9-201ENST00000439890 892 ntBASIC4.51□□□□□ -1.69
HOXA1P49639 ATP5LP2-201ENST00000440646 311 ntBASIC4.51□□□□□ -1.69
HOXA1P49639 TBX18-AS1-202ENST00000441863 382 ntTSL 2 BASIC4.51□□□□□ -1.69
HOXA1P49639 AL392089.1-202ENST00000444793 449 ntTSL 2 BASIC4.51□□□□□ -1.69
HOXA1P49639 AL035443.1-201ENST00000456631 304 ntTSL 3 BASIC4.51□□□□□ -1.69
HOXA1P49639 AC019084.1-201ENST00000457337 432 ntBASIC4.51□□□□□ -1.69
HOXA1P49639 ARPP21-231ENST00000474696 572 ntTSL 2 BASIC4.51□□□□□ -1.69
HOXA1P49639 RPL23AP37-201ENST00000479658 549 ntBASIC4.51□□□□□ -1.69
HOXA1P49639 RN7SL570P-201ENST00000484405 292 ntBASIC4.51□□□□□ -1.69
HOXA1P49639 MTCO3P35-201ENST00000485582 781 ntBASIC4.51□□□□□ -1.69
HOXA1P49639 RN7SL214P-201ENST00000487317 265 ntBASIC4.51□□□□□ -1.69
HOXA1P49639 AC021146.5-201ENST00000503544 545 ntBASIC4.51□□□□□ -1.69
HOXA1P49639 LINC00603-201ENST00000507027 733 ntTSL 5 BASIC4.51□□□□□ -1.69
HOXA1P49639 AC113420.1-201ENST00000507903 571 ntBASIC4.51□□□□□ -1.69
HOXA1P49639 MYLK-AS2-201ENST00000510827 500 ntTSL 3 BASIC4.51□□□□□ -1.69
HOXA1P49639 LINC02353-201ENST00000515181 849 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
HOXA1P49639 MYLK-AS2-202ENST00000515464 754 ntTSL 2 BASIC4.51□□□□□ -1.69
HOXA1P49639 RN7SKP35-201ENST00000517210 151 ntBASIC4.51□□□□□ -1.69
HOXA1P49639 AC109635.6-201ENST00000525487 1113 ntBASIC4.51□□□□□ -1.69
HOXA1P49639 OR5AM1P-201ENST00000532136 1032 ntBASIC4.51□□□□□ -1.69
HOXA1P49639 AC107918.3-201ENST00000533272 382 ntBASIC4.51□□□□□ -1.69
HOXA1P49639 AC139103.1-201ENST00000534696 1030 ntBASIC4.51□□□□□ -1.69
HOXA1P49639 AC130404.1-201ENST00000539362 739 ntTSL 2 BASIC4.51□□□□□ -1.69
HOXA1P49639 PDCD5P1-201ENST00000543528 309 ntBASIC4.51□□□□□ -1.69
HOXA1P49639 FRMD6-AS2-201ENST00000556617 548 ntTSL 4 BASIC4.51□□□□□ -1.69
HOXA1P49639 MIR4502-201ENST00000580432 81 ntBASIC4.51□□□□□ -1.69
HOXA1P49639 RPP40P2-201ENST00000603596 712 ntBASIC4.51□□□□□ -1.69
HOXA1P49639 EAF1-AS1-211ENST00000610011 316 ntTSL 5 BASIC4.51□□□□□ -1.69
HOXA1P49639 MIR6721-201ENST00000617181 87 ntBASIC4.51□□□□□ -1.69
HOXA1P49639 NEK3-211ENST00000629912 141 ntTSL 5 BASIC4.51□□□□□ -1.69
HOXA1P49639 AC245427.3-201ENST00000632041 51 ntAPPRIS P1 BASIC4.51□□□□□ -1.69
HOXA1P49639 AL589740.1-205ENST00000635561 565 ntTSL 5 BASIC4.51□□□□□ -1.69
HOXA1P49639 SCN1A-220ENST00000641603 12506 ntBASIC4.51□□□□□ -1.69
HOXA1P49639 AC239809.3-214ENST00000496508 2513 ntTSL 2 BASIC4.51□□□□□ -1.69
HOXA1P49639 BMPR1APS1-201ENST00000403332 1598 ntBASIC4.51□□□□□ -1.69
HOXA1P49639 AL354854.1-201ENST00000455940 1363 ntBASIC4.51□□□□□ -1.69
HOXA1P49639 AP4S1-212ENST00000622409 4113 ntAPPRIS P1 TSL 3 BASIC4.51□□□□□ -1.69
HOXA1P49639 PCF11-AS1-201ENST00000602322 1516 ntBASIC4.51□□□□□ -1.69
HOXA1P49639 AL020995.1-201ENST00000427524 1680 ntTSL 2 BASIC4.51□□□□□ -1.69
HOXA1P49639 PWAR1-201ENST00000624188 2414 ntBASIC4.51□□□□□ -1.69
HOXA1P49639 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC4.51□□□□□ -1.69
HOXA1P49639 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC4.5□□□□□ -1.69
HOXA1P49639 SYT14-206ENST00000537238 5208 ntAPPRIS ALT2 TSL 5 BASIC4.5□□□□□ -1.69
HOXA1P49639 RPL34-AS1-202ENST00000507248 3713 ntTSL 2 BASIC4.5□□□□□ -1.69
HOXA1P49639 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC4.5□□□□□ -1.69
HOXA1P49639 GSTM2-206ENST00000442650 1478 ntTSL 5 BASIC4.5□□□□□ -1.69
HOXA1P49639 SEPT7P7-201ENST00000420492 1301 ntBASIC4.5□□□□□ -1.69
HOXA1P49639 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC4.5□□□□□ -1.69
HOXA1P49639 SIAH1-202ENST00000380006 3352 ntAPPRIS P3 BASIC4.5□□□□□ -1.69
HOXA1P49639 RRM1-201ENST00000300738 3076 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
HOXA1P49639 HSPD1P11-201ENST00000508643 1702 ntBASIC4.5□□□□□ -1.69
HOXA1P49639 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC4.5□□□□□ -1.69
HOXA1P49639 LTN1-202ENST00000389194 7749 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
HOXA1P49639 MTHFD2L-207ENST00000433372 1407 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
HOXA1P49639 PPBP-201ENST00000296028 715 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
HOXA1P49639 TSLP-201ENST00000344895 736 ntAPPRIS P2 TSL 1 (best) BASIC4.5□□□□□ -1.69
HOXA1P49639 MCTS2P-201ENST00000394552 546 ntBASIC4.5□□□□□ -1.69
HOXA1P49639 LAP3P1-201ENST00000403648 294 ntBASIC4.5□□□□□ -1.69
HOXA1P49639 ZNF602P-201ENST00000405929 924 ntBASIC4.5□□□□□ -1.69
HOXA1P49639 AL512430.2-201ENST00000406786 339 ntBASIC4.5□□□□□ -1.69
HOXA1P49639 FO393401.1-203ENST00000416260 486 ntTSL 5 BASIC4.5□□□□□ -1.69
HOXA1P49639 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC4.5□□□□□ -1.69
HOXA1P49639 AK4P4-201ENST00000419465 646 ntBASIC4.5□□□□□ -1.69
HOXA1P49639 PTP4A1P1-201ENST00000420539 515 ntBASIC4.5□□□□□ -1.69
HOXA1P49639 AC115285.1-201ENST00000424879 736 ntBASIC4.5□□□□□ -1.69
HOXA1P49639 OSTCP5-201ENST00000425293 453 ntBASIC4.5□□□□□ -1.69
HOXA1P49639 BACH1-IT3-201ENST00000429843 406 ntTSL 2 BASIC4.5□□□□□ -1.69
HOXA1P49639 AL590999.1-204ENST00000430595 638 ntTSL 3 BASIC4.5□□□□□ -1.69
HOXA1P49639 NDUFB4P8-201ENST00000435351 367 ntBASIC4.5□□□□□ -1.69
HOXA1P49639 ELOCP11-201ENST00000436690 332 ntBASIC4.5□□□□□ -1.69
HOXA1P49639 AL807757.1-201ENST00000437846 424 ntTSL 3 BASIC4.5□□□□□ -1.69
HOXA1P49639 OR10R1P-201ENST00000441524 1141 ntBASIC4.5□□□□□ -1.69
HOXA1P49639 ELOCP16-201ENST00000444494 332 ntBASIC4.5□□□□□ -1.69
HOXA1P49639 AC023512.1-201ENST00000444513 499 ntBASIC4.5□□□□□ -1.69
HOXA1P49639 MTND1P31-201ENST00000449206 961 ntBASIC4.5□□□□□ -1.69
HOXA1P49639 TMSB4X-204ENST00000451311 628 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
HOXA1P49639 AP001596.1-202ENST00000452460 644 ntTSL 3 BASIC4.5□□□□□ -1.69
HOXA1P49639 RPS4XP6-201ENST00000477670 797 ntBASIC4.5□□□□□ -1.69
HOXA1P49639 RPL32P33-201ENST00000487023 394 ntBASIC4.5□□□□□ -1.69
HOXA1P49639 AC093607.1-202ENST00000499715 559 ntTSL 4 BASIC4.5□□□□□ -1.69
HOXA1P49639 AK6-203ENST00000502819 743 ntTSL 5 BASIC4.5□□□□□ -1.69
HOXA1P49639 MTCYBP35-201ENST00000503630 1137 ntBASIC4.5□□□□□ -1.69
HOXA1P49639 AC091874.2-201ENST00000505889 720 ntBASIC4.5□□□□□ -1.69
HOXA1P49639 AC097512.1-203ENST00000506425 957 ntTSL 3 BASIC4.5□□□□□ -1.69
HOXA1P49639 AC008780.2-201ENST00000509844 820 ntTSL 2 BASIC4.5□□□□□ -1.69
HOXA1P49639 RN7SKP141-201ENST00000516167 338 ntBASIC4.5□□□□□ -1.69
HOXA1P49639 RN7SKP287-201ENST00000516546 266 ntBASIC4.5□□□□□ -1.69
HOXA1P49639 LINC01932-201ENST00000520323 573 ntTSL 5 BASIC4.5□□□□□ -1.69
HOXA1P49639 AC064802.1-201ENST00000521523 866 ntTSL 2 BASIC4.5□□□□□ -1.69
HOXA1P49639 PCNAP4-201ENST00000532690 730 ntBASIC4.5□□□□□ -1.69
HOXA1P49639 AP003717.3-201ENST00000544832 1180 ntBASIC4.5□□□□□ -1.69
HOXA1P49639 AC063947.1-201ENST00000549036 557 ntTSL 4 BASIC4.5□□□□□ -1.69
HOXA1P49639 PPFIA2-AS1-210ENST00000553197 875 ntTSL 5 BASIC4.5□□□□□ -1.69
HOXA1P49639 AC007956.1-201ENST00000555623 542 ntBASIC4.5□□□□□ -1.69
HOXA1P49639 AC006530.1-201ENST00000555980 571 ntBASIC4.5□□□□□ -1.69
HOXA1P49639 AL442163.1-201ENST00000557251 515 ntTSL 5 BASIC4.5□□□□□ -1.69
HOXA1P49639 ZNF971P-201ENST00000562068 1249 ntBASIC4.5□□□□□ -1.69
HOXA1P49639 AC096996.1-201ENST00000563813 325 ntBASIC4.5□□□□□ -1.69
HOXA1P49639 AC016134.1-201ENST00000565259 701 ntTSL 3 BASIC4.5□□□□□ -1.69
HOXA1P49639 AC087190.2-201ENST00000565648 731 ntTSL 3 BASIC4.5□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 95.3 ms