Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 TMEM212-IT1-201ENST00000456146 470 ntTSL 3 BASIC4.5□□□□□ -1.69
NKX3-1Q99801 OR2AO1P-201ENST00000476497 403 ntBASIC4.5□□□□□ -1.69
NKX3-1Q99801 RN7SL184P-201ENST00000488308 297 ntBASIC4.5□□□□□ -1.69
NKX3-1Q99801 HMGB1P44-201ENST00000508597 572 ntBASIC4.5□□□□□ -1.69
NKX3-1Q99801 AC079226.2-201ENST00000509283 518 ntTSL 2 BASIC4.5□□□□□ -1.69
NKX3-1Q99801 MYLK-AS2-201ENST00000510827 500 ntTSL 3 BASIC4.5□□□□□ -1.69
NKX3-1Q99801 AC006063.1-201ENST00000512511 560 ntTSL 4 BASIC4.5□□□□□ -1.69
NKX3-1Q99801 RAD21-203ENST00000517749 1003 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
NKX3-1Q99801 HIGD1AP18-201ENST00000520730 278 ntBASIC4.5□□□□□ -1.69
NKX3-1Q99801 THUMPD3-AS1-215ENST00000521609 793 ntTSL 5 BASIC4.5□□□□□ -1.69
NKX3-1Q99801 AP000873.2-203ENST00000528524 549 ntTSL 2 BASIC4.5□□□□□ -1.69
NKX3-1Q99801 YWHABP2-201ENST00000540201 713 ntBASIC4.5□□□□□ -1.69
NKX3-1Q99801 SYNE2-210ENST00000553455 674 ntTSL 2 BASIC4.5□□□□□ -1.69
NKX3-1Q99801 BLZF2P-201ENST00000553776 1130 ntBASIC4.5□□□□□ -1.69
NKX3-1Q99801 AC127381.1-201ENST00000555979 939 ntBASIC4.5□□□□□ -1.69
NKX3-1Q99801 AC092078.2-201ENST00000560900 581 ntTSL 4 BASIC4.5□□□□□ -1.69
NKX3-1Q99801 AC020661.4-201ENST00000561388 500 ntTSL 3 BASIC4.5□□□□□ -1.69
NKX3-1Q99801 MIR1273E-201ENST00000581165 102 ntBASIC4.5□□□□□ -1.69
NKX3-1Q99801 LINC00397-202ENST00000606785 409 ntTSL 5 BASIC4.5□□□□□ -1.69
NKX3-1Q99801 AL391834.1-201ENST00000609609 560 ntBASIC4.5□□□□□ -1.69
NKX3-1Q99801 PLSCR2-207ENST00000613069 1208 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
NKX3-1Q99801 AC037198.3-201ENST00000616754 526 ntBASIC4.5□□□□□ -1.69
NKX3-1Q99801 AC022306.3-201ENST00000619930 550 ntBASIC4.5□□□□□ -1.69
NKX3-1Q99801 CU639417.4-201ENST00000623928 207 ntBASIC4.5□□□□□ -1.69
NKX3-1Q99801 ADAMTS9-AS1-210ENST00000625328 699 ntTSL 5 BASIC4.5□□□□□ -1.69
NKX3-1Q99801 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC4.5□□□□□ -1.69
NKX3-1Q99801 OR9Q2-202ENST00000641291 3774 ntAPPRIS P1 BASIC4.5□□□□□ -1.69
NKX3-1Q99801 OR9G1-202ENST00000642097 3611 ntAPPRIS P1 BASIC4.5□□□□□ -1.69
NKX3-1Q99801 OR55B1P-203ENST00000641518 2602 ntBASIC4.5□□□□□ -1.69
NKX3-1Q99801 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC4.5□□□□□ -1.69
NKX3-1Q99801 KCNH7-205ENST00000621889 1893 ntTSL 5 BASIC4.49□□□□□ -1.69
NKX3-1Q99801 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC4.49□□□□□ -1.69
NKX3-1Q99801 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
NKX3-1Q99801 CIR1P2-201ENST00000514821 1342 ntBASIC4.49□□□□□ -1.69
NKX3-1Q99801 OBSCN-210ENST00000570156 26925 ntAPPRIS P1 TSL 5 BASIC4.49□□□□□ -1.69
NKX3-1Q99801 DNAAF4-CCPG1-201ENST00000565113 4589 ntTSL 2 BASIC4.49□□□□□ -1.69
NKX3-1Q99801 RXFP1-206ENST00000460056 2735 ntTSL 2 BASIC4.49□□□□□ -1.69
NKX3-1Q99801 FAM184A-212ENST00000522284 2721 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
NKX3-1Q99801 ARHGEF6-203ENST00000370622 4779 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
NKX3-1Q99801 AC004982.1-201ENST00000608770 1655 ntTSL 4 BASIC4.49□□□□□ -1.69
NKX3-1Q99801 OR8H2-201ENST00000313503 3088 ntAPPRIS P2 BASIC4.49□□□□□ -1.69
NKX3-1Q99801 CCDC169-202ENST00000239860 716 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
NKX3-1Q99801 OR2AE1-201ENST00000316368 1071 ntAPPRIS P1 BASIC4.49□□□□□ -1.69
NKX3-1Q99801 OR6C74-201ENST00000343870 1105 ntAPPRIS P1 BASIC4.49□□□□□ -1.69
NKX3-1Q99801 RNU6-252P-201ENST00000363232 107 ntBASIC4.49□□□□□ -1.69
NKX3-1Q99801 RN7SKP153-201ENST00000365026 316 ntBASIC4.49□□□□□ -1.69
NKX3-1Q99801 RNU6-1005P-201ENST00000384519 107 ntBASIC4.49□□□□□ -1.69
NKX3-1Q99801 ATP5HP3-201ENST00000396994 486 ntBASIC4.49□□□□□ -1.69
NKX3-1Q99801 EFCAB9-201ENST00000398186 702 ntAPPRIS P1 TSL 3 BASIC4.49□□□□□ -1.69
NKX3-1Q99801 TANK-203ENST00000402568 878 ntTSL 5 BASIC4.49□□□□□ -1.69
NKX3-1Q99801 NPM1P4-201ENST00000414095 812 ntBASIC4.49□□□□□ -1.69
NKX3-1Q99801 AC109779.1-201ENST00000414475 573 ntTSL 5 BASIC4.49□□□□□ -1.69
NKX3-1Q99801 LMO7DN-IT1-201ENST00000436872 321 ntTSL 3 BASIC4.49□□□□□ -1.69
NKX3-1Q99801 KRTAP8-2P-201ENST00000440620 186 ntBASIC4.49□□□□□ -1.69
NKX3-1Q99801 AF064858.2-201ENST00000440714 292 ntTSL 3 BASIC4.49□□□□□ -1.69
NKX3-1Q99801 MLIP-IT1-201ENST00000441845 643 ntTSL 2 BASIC4.49□□□□□ -1.69
NKX3-1Q99801 MOB1AP2-201ENST00000446060 614 ntBASIC4.49□□□□□ -1.69
NKX3-1Q99801 LINC01344-202ENST00000449842 571 ntTSL 3 BASIC4.49□□□□□ -1.69
NKX3-1Q99801 HMGB1P5-202ENST00000451497 985 ntBASIC4.49□□□□□ -1.69
NKX3-1Q99801 AL606490.1-201ENST00000452266 765 ntBASIC4.49□□□□□ -1.69
NKX3-1Q99801 BX546450.1-201ENST00000454307 482 ntTSL 2 BASIC4.49□□□□□ -1.69
NKX3-1Q99801 AC034195.1-203ENST00000455703 728 ntTSL 2 BASIC4.49□□□□□ -1.69
NKX3-1Q99801 RN7SL189P-201ENST00000468631 289 ntBASIC4.49□□□□□ -1.69
NKX3-1Q99801 RPL35AP19-201ENST00000469425 329 ntBASIC4.49□□□□□ -1.69
NKX3-1Q99801 AC116562.1-201ENST00000485355 781 ntBASIC4.49□□□□□ -1.69
NKX3-1Q99801 RN7SL547P-201ENST00000490793 290 ntBASIC4.49□□□□□ -1.69
NKX3-1Q99801 AC108693.1-201ENST00000496068 432 ntBASIC4.49□□□□□ -1.69
NKX3-1Q99801 CAB39P1-201ENST00000502277 460 ntBASIC4.49□□□□□ -1.69
NKX3-1Q99801 LNCPRESS2-201ENST00000502518 616 ntTSL 5 BASIC4.49□□□□□ -1.69
NKX3-1Q99801 AC112206.2-204ENST00000504068 793 ntTSL 3 BASIC4.49□□□□□ -1.69
NKX3-1Q99801 AC097512.1-203ENST00000506425 957 ntTSL 3 BASIC4.49□□□□□ -1.69
NKX3-1Q99801 AC126768.1-201ENST00000511698 490 ntTSL 3 BASIC4.49□□□□□ -1.69
NKX3-1Q99801 AC140125.1-201ENST00000515739 684 ntTSL 5 BASIC4.49□□□□□ -1.69
NKX3-1Q99801 RNU6-1308P-201ENST00000516817 103 ntBASIC4.49□□□□□ -1.69
NKX3-1Q99801 RNA5SP373-201ENST00000517271 95 ntBASIC4.49□□□□□ -1.69
NKX3-1Q99801 TBCA-207ENST00000520039 157 ntTSL 3 BASIC4.49□□□□□ -1.69
NKX3-1Q99801 C1DP5-201ENST00000525775 383 ntBASIC4.49□□□□□ -1.69
NKX3-1Q99801 MS4A6A-210ENST00000529054 1160 ntTSL 5 BASIC4.49□□□□□ -1.69
NKX3-1Q99801 EQTN-204ENST00000537675 879 ntAPPRIS ALT2 TSL 1 (best) BASIC4.49□□□□□ -1.69
NKX3-1Q99801 AC006349.1-201ENST00000555526 235 ntBASIC4.49□□□□□ -1.69
NKX3-1Q99801 RPL10P14-201ENST00000565265 298 ntBASIC4.49□□□□□ -1.69
NKX3-1Q99801 AC021483.2-201ENST00000567415 758 ntBASIC4.49□□□□□ -1.69
NKX3-1Q99801 AC104072.1-201ENST00000568817 668 ntBASIC4.49□□□□□ -1.69
NKX3-1Q99801 AC005341.1-201ENST00000571086 708 ntBASIC4.49□□□□□ -1.69
NKX3-1Q99801 CBX3P2-202ENST00000583365 535 ntBASIC4.49□□□□□ -1.69
NKX3-1Q99801 LINC01835-202ENST00000589345 450 ntTSL 3 BASIC4.49□□□□□ -1.69
NKX3-1Q99801 AC090621.1-201ENST00000592121 419 ntTSL 3 BASIC4.49□□□□□ -1.69
NKX3-1Q99801 AC008537.2-201ENST00000596135 482 ntTSL 3 BASIC4.49□□□□□ -1.69
NKX3-1Q99801 BNIP3P27-201ENST00000599991 412 ntBASIC4.49□□□□□ -1.69
NKX3-1Q99801 AF230666.2-201ENST00000602328 725 ntBASIC4.49□□□□□ -1.69
NKX3-1Q99801 AC008814.1-201ENST00000603797 406 ntBASIC4.49□□□□□ -1.69
NKX3-1Q99801 AC011458.1-201ENST00000604034 617 ntBASIC4.49□□□□□ -1.69
NKX3-1Q99801 AC110792.4-201ENST00000609843 298 ntBASIC4.49□□□□□ -1.69
NKX3-1Q99801 AL512624.1-201ENST00000613638 469 ntBASIC4.49□□□□□ -1.69
NKX3-1Q99801 AL139407.1-201ENST00000613826 1175 ntBASIC4.49□□□□□ -1.69
NKX3-1Q99801 AL356274.1-201ENST00000617064 410 ntBASIC4.49□□□□□ -1.69
NKX3-1Q99801 AC073869.10-201ENST00000642016 354 ntBASIC4.49□□□□□ -1.69
NKX3-1Q99801 SAMMSON-227ENST00000642114 1199 ntBASIC4.49□□□□□ -1.69
NKX3-1Q99801 UBR1-201ENST00000290650 7761 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
NKX3-1Q99801 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC4.49□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 200.5 ms