RNA–Protein interactions for RNA: ENST00000553455.1

SYNE2-210, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2 BASIC

Gene SYNE2, Length 674 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-210ENST00000553455 AEBP2Q6ZN18 517 aaPredicted RBP23.3■■□□□ 1.32
SYNE2-210ENST00000553455 CHIC1Q5VXU3 224 aa23.16■■□□□ 1.3
SYNE2-210ENST00000553455 PHF23Q9BUL5 403 aaPredicted RBP20.47■□□□□ 0.87
SYNE2-210ENST00000553455 SENP3Q9H4L4 574 aaPredicted RBP19.61■□□□□ 0.73
SYNE2-210ENST00000553455 PLPPR3Q6T4P5 718 aa18.97■□□□□ 0.63
SYNE2-210ENST00000553455 FOXD1Q16676 465 aa18.19■□□□□ 0.5
SYNE2-210ENST00000553455 PPP6R1Q9UPN7 881 aa17.9■□□□□ 0.46
SYNE2-210ENST00000553455 ADRA2BP18089 450 aa17.88■□□□□ 0.45
SYNE2-210ENST00000553455 PIAS4Q8N2W9 510 aaPredicted RBP17.23■□□□□ 0.35
SYNE2-210ENST00000553455 KCNA4P22459 653 aa16.97■□□□□ 0.31
SYNE2-210ENST00000553455 PPP4R3CPQ6ZMV5 832 aa16.8■□□□□ 0.28
SYNE2-210ENST00000553455 MSH5O43196 834 aa16.53■□□□□ 0.24
SYNE2-210ENST00000553455 NCBP3Q53F19 620 aaKnown RBP16.43■□□□□ 0.22
SYNE2-210ENST00000553455 NPM3O75607 178 aaKnown RBP16.28■□□□□ 0.2
SYNE2-210ENST00000553455 EHMT2Q96KQ7 1210 aa16.28■□□□□ 0.2
SYNE2-210ENST00000553455 SCAF1Q9H7N4 1312 aaKnown RBP16.25■□□□□ 0.19
SYNE2-210ENST00000553455 CNKSR2Q8WXI2 1034 aa16.21■□□□□ 0.19
SYNE2-210ENST00000553455 SLC4A1APQ9BWU0 796 aaKnown RBP16.2■□□□□ 0.18
SYNE2-210ENST00000553455 MAPK8IP2Q13387 824 aaPredicted RBP16.09■□□□□ 0.17
SYNE2-210ENST00000553455 POTEDQ86YR6 584 aa15.99■□□□□ 0.15
SYNE2-210ENST00000553455 CSRNP3Q8WYN3 585 aa15.92■□□□□ 0.14
SYNE2-210ENST00000553455 RNF216Q9NWF9 866 aaPredicted RBP15.79■□□□□ 0.12
SYNE2-210ENST00000553455 DMRT2Q9Y5R5 561 aa15.76■□□□□ 0.11
SYNE2-210ENST00000553455 DNAJC5BQ9UF47 199 aa15.75■□□□□ 0.11
SYNE2-210ENST00000553455 ZBTB22O15209 634 aa15.68■□□□□ 0.1
SYNE2-210ENST00000553455 HOXD11P31277 338 aaPredicted RBP15.63■□□□□ 0.09
SYNE2-210ENST00000553455 FOXD4L1Q9NU39 408 aa15.45■□□□□ 0.06
SYNE2-210ENST00000553455 SLC4A2P04920 1241 aa15.28■□□□□ 0.04
SYNE2-210ENST00000553455 MYCNP04198 464 aaPredicted RBP14.99□□□□□ -0.01
SYNE2-210ENST00000553455 DCAF8L1A6NGE4 600 aa14.98□□□□□ -0.01
SYNE2-210ENST00000553455 ATXN8OSP0DMR3 200 aa14.86□□□□□ -0.03
SYNE2-210ENST00000553455 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.82□□□□□ -0.04
SYNE2-210ENST00000553455 U3KPZ7 1027 aaPredicted RBP14.71□□□□□ -0.05
SYNE2-210ENST00000553455 ATF5Q9Y2D1 282 aaPredicted RBP14.62□□□□□ -0.07
SYNE2-210ENST00000553455 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.58□□□□□ -0.08
SYNE2-210ENST00000553455 HNRNPUL2Q1KMD3 747 aaKnown RBP14.58□□□□□ -0.08
SYNE2-210ENST00000553455 SAMD1Q6SPF0 538 aaPredicted RBP14.58□□□□□ -0.08
SYNE2-210ENST00000553455 FKBP8Q14318 412 aa14.32□□□□□ -0.12
SYNE2-210ENST00000553455 APLP2Q06481 763 aa14.3□□□□□ -0.12
SYNE2-210ENST00000553455 ZNF219Q9P2Y4 722 aaPredicted RBP14.28□□□□□ -0.12
SYNE2-210ENST00000553455 RNF39Q9H2S5 420 aa14.26□□□□□ -0.13
SYNE2-210ENST00000553455 SPINK5Q9NQ38 1064 aaPredicted RBP14.16□□□□□ -0.14
SYNE2-210ENST00000553455 C1QBPQ07021 282 aaKnown RBP14.07□□□□□ -0.16
SYNE2-210ENST00000553455 TRHP20396 242 aaPredicted RBP14.06□□□□□ -0.16
SYNE2-210ENST00000553455 CAPN15O75808 1086 aa14.01□□□□□ -0.17
SYNE2-210ENST00000553455 MKRN4PQ13434 485 aaPredicted RBP14.01□□□□□ -0.17
SYNE2-210ENST00000553455 POLA2Q14181 598 aa13.96□□□□□ -0.17
SYNE2-210ENST00000553455 RTN4Q9NQC3 1192 aaKnown RBP13.89□□□□□ -0.19
SYNE2-210ENST00000553455 FBLN2P98095 1184 aa13.87□□□□□ -0.19
SYNE2-210ENST00000553455 SPDYE4A6NLX3 237 aa13.85□□□□□ -0.19
SYNE2-210ENST00000553455 AMER1Q5JTC6 1135 aaPredicted RBP13.85□□□□□ -0.19
SYNE2-210ENST00000553455 ABCB7O75027 752 aa13.83□□□□□ -0.2
SYNE2-210ENST00000553455 PROM2Q8N271 834 aa13.77□□□□□ -0.21
SYNE2-210ENST00000553455 DSG3P32926 999 aa13.73□□□□□ -0.21
SYNE2-210ENST00000553455 ZBTB12Q9Y330 459 aaPredicted RBP13.73□□□□□ -0.21
SYNE2-210ENST00000553455 FBXO3Q9UK99 471 aa13.63□□□□□ -0.23
SYNE2-210ENST00000553455 VASPP50552 380 aaPredicted RBP13.5□□□□□ -0.25
SYNE2-210ENST00000553455 OSCARQ8IYS5 282 aa13.5□□□□□ -0.25
SYNE2-210ENST00000553455 CACNB1Q02641 598 aaPredicted RBP13.48□□□□□ -0.25
SYNE2-210ENST00000553455 SPDYE2BA6NHP3 402 aa13.43□□□□□ -0.26
SYNE2-210ENST00000553455 SPDYE6P0CI01 402 aa13.43□□□□□ -0.26
SYNE2-210ENST00000553455 SPDYE2Q495Y8 402 aa13.43□□□□□ -0.26
SYNE2-210ENST00000553455 ZNF692Q9BU19 519 aaPredicted RBP13.43□□□□□ -0.26
SYNE2-210ENST00000553455 SSUH2Q9Y2M2 353 aa13.43□□□□□ -0.26
SYNE2-210ENST00000553455 IFNLR1Q8IU57 520 aaPredicted RBP13.37□□□□□ -0.27
SYNE2-210ENST00000553455 PABPN1Q86U42 306 aaKnown RBP eCLIP13.29□□□□□ -0.28
SYNE2-210ENST00000553455 SLC24A1O60721 1099 aa13.27□□□□□ -0.29
SYNE2-210ENST00000553455 STAG3Q9UJ98 1225 aa13.22□□□□□ -0.29
SYNE2-210ENST00000553455 PKD2Q13563 968 aa13.12□□□□□ -0.31
SYNE2-210ENST00000553455 KLHL34Q8N239 644 aa13.08□□□□□ -0.32
SYNE2-210ENST00000553455 PLCD3Q8N3E9 789 aa13.08□□□□□ -0.32
SYNE2-210ENST00000553455 SPOCK2Q92563 424 aa13.08□□□□□ -0.32
SYNE2-210ENST00000553455 MIER1Q8N108 512 aa13.04□□□□□ -0.32
SYNE2-210ENST00000553455 RBM42Q9BTD8 480 aaKnown RBP13□□□□□ -0.33
SYNE2-210ENST00000553455 AKT1S1Q96B36 256 aa12.97□□□□□ -0.33
SYNE2-210ENST00000553455 SPDYE1Q8NFV5 336 aaPredicted RBP12.9□□□□□ -0.34
SYNE2-210ENST00000553455 PLEKHG5O94827 1062 aa12.89□□□□□ -0.35
SYNE2-210ENST00000553455 DCAF8L2P0C7V8 631 aa12.89□□□□□ -0.35
SYNE2-210ENST00000553455 ZBTB47Q9UFB7 747 aaPredicted RBP12.89□□□□□ -0.35
SYNE2-210ENST00000553455 ECM2O94769 699 aaPredicted RBP12.88□□□□□ -0.35
SYNE2-210ENST00000553455 REM2Q8IYK8 340 aaPredicted RBP12.86□□□□□ -0.35
SYNE2-210ENST00000553455 PLCB2Q00722 1185 aa12.83□□□□□ -0.36
SYNE2-210ENST00000553455 CLEC11AQ9Y240 323 aa12.81□□□□□ -0.36
SYNE2-210ENST00000553455 RGL2O15211 777 aa12.8□□□□□ -0.36
SYNE2-210ENST00000553455 CREBZFQ9NS37 354 aa12.78□□□□□ -0.36
SYNE2-210ENST00000553455 CIZ1Q9ULV3 898 aaPredicted RBP12.78□□□□□ -0.36
SYNE2-210ENST00000553455 PRR29P0C7W0 189 aa12.76□□□□□ -0.37
SYNE2-210ENST00000553455 MNX1P50219 401 aaPredicted RBP12.74□□□□□ -0.37
SYNE2-210ENST00000553455 NUBP1P53384 320 aa12.74□□□□□ -0.37
SYNE2-210ENST00000553455 PITPNM1O00562 1244 aa12.73□□□□□ -0.37
SYNE2-210ENST00000553455 NPM1P06748 294 aaKnown RBP eCLIP12.73□□□□□ -0.37
SYNE2-210ENST00000553455 TRIM41Q8WV44 630 aa12.68□□□□□ -0.38
SYNE2-210ENST00000553455 GSE1Q14687 1217 aa12.66□□□□□ -0.38
SYNE2-210ENST00000553455 BBXQ8WY36 941 aaPredicted RBP12.65□□□□□ -0.38
SYNE2-210ENST00000553455 RNF25Q96BH1 459 aaPredicted RBP12.62□□□□□ -0.39
SYNE2-210ENST00000553455 HAP1P54257 671 aaPredicted RBP12.6□□□□□ -0.39
SYNE2-210ENST00000553455 DCAF8Q5TAQ9 597 aa12.59□□□□□ -0.39
SYNE2-210ENST00000553455 RASEFQ8IZ41 740 aa12.58□□□□□ -0.4
SYNE2-210ENST00000553455 FAM212AQ96EL1 285 aa12.57□□□□□ -0.4
SYNE2-210ENST00000553455 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms