Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 FAM183DP-201ENST00000421987 399 ntBASIC6.11□□□□□ -1.43
RNF4P78317 AL389915.1-201ENST00000422463 466 ntBASIC6.11□□□□□ -1.43
RNF4P78317 AC009480.2-201ENST00000422916 432 ntBASIC6.11□□□□□ -1.43
RNF4P78317 AL513175.1-201ENST00000431492 780 ntBASIC6.11□□□□□ -1.43
RNF4P78317 AL645939.3-201ENST00000435408 225 ntBASIC6.11□□□□□ -1.43
RNF4P78317 CYCSP11-201ENST00000436426 315 ntBASIC6.11□□□□□ -1.43
RNF4P78317 HMGB1P31-201ENST00000437242 427 ntBASIC6.11□□□□□ -1.43
RNF4P78317 AL139220.2-214ENST00000437643 614 ntTSL 3 BASIC6.11□□□□□ -1.43
RNF4P78317 TRIM60P16-201ENST00000444048 694 ntBASIC6.11□□□□□ -1.43
RNF4P78317 AC092601.1-201ENST00000444526 383 ntBASIC6.11□□□□□ -1.43
RNF4P78317 PDSS1P2-201ENST00000449397 678 ntBASIC6.11□□□□□ -1.43
RNF4P78317 AL158835.1-204ENST00000449693 371 ntTSL 3 BASIC6.11□□□□□ -1.43
RNF4P78317 USP9YP34-201ENST00000453983 808 ntBASIC6.11□□□□□ -1.43
RNF4P78317 NDUFB3-204ENST00000454214 547 ntAPPRIS P1 TSL 2 BASIC6.11□□□□□ -1.43
RNF4P78317 RNU7-27P-201ENST00000459281 62 ntBASIC6.11□□□□□ -1.43
RNF4P78317 VAMP3-202ENST00000470357 954 ntTSL 3 BASIC6.11□□□□□ -1.43
RNF4P78317 VPS13A-211ENST00000484581 1155 ntTSL 2 BASIC6.11□□□□□ -1.43
RNF4P78317 HMGB1P36-201ENST00000487709 576 ntBASIC6.11□□□□□ -1.43
RNF4P78317 AC023424.2-201ENST00000493479 777 ntBASIC6.11□□□□□ -1.43
RNF4P78317 AC078788.1-201ENST00000498457 634 ntTSL 3 BASIC6.11□□□□□ -1.43
RNF4P78317 FAM92A1P2-202ENST00000504766 877 ntBASIC6.11□□□□□ -1.43
RNF4P78317 LINC02383-201ENST00000508563 582 ntTSL 3 BASIC6.11□□□□□ -1.43
RNF4P78317 AC114781.4-201ENST00000513707 639 ntBASIC6.11□□□□□ -1.43
RNF4P78317 IGKV2D-10-201ENST00000520194 281 ntBASIC6.11□□□□□ -1.43
RNF4P78317 HMMR-AS1-202ENST00000521666 800 ntTSL 2 BASIC6.11□□□□□ -1.43
RNF4P78317 AC008429.2-201ENST00000523057 864 ntBASIC6.11□□□□□ -1.43
RNF4P78317 AC239860.2-201ENST00000525886 270 ntBASIC6.11□□□□□ -1.43
RNF4P78317 OR4A45P-201ENST00000529954 901 ntBASIC6.11□□□□□ -1.43
RNF4P78317 TPPP2-208ENST00000530140 703 ntAPPRIS P1 TSL 2 BASIC6.11□□□□□ -1.43
RNF4P78317 ST3GAL3-232ENST00000531451 420 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
RNF4P78317 AP004247.1-201ENST00000531556 1289 ntBASIC6.11□□□□□ -1.43
RNF4P78317 LINC02420-201ENST00000543387 741 ntTSL 5 BASIC6.11□□□□□ -1.43
RNF4P78317 LINC01916-201ENST00000582028 559 ntTSL 4 BASIC6.11□□□□□ -1.43
RNF4P78317 AC022031.2-203ENST00000587346 565 ntTSL 4 BASIC6.11□□□□□ -1.43
RNF4P78317 AP000860.1-201ENST00000605250 559 ntBASIC6.11□□□□□ -1.43
RNF4P78317 AL513218.1-201ENST00000606527 391 ntBASIC6.11□□□□□ -1.43
RNF4P78317 AL354760.1-201ENST00000608357 643 ntBASIC6.11□□□□□ -1.43
RNF4P78317 AP004247.3-201ENST00000608682 624 ntBASIC6.11□□□□□ -1.43
RNF4P78317 TUG1_1.1-201ENST00000610654 145 ntBASIC6.11□□□□□ -1.43
RNF4P78317 AC068726.1-201ENST00000610993 341 ntBASIC6.11□□□□□ -1.43
RNF4P78317 AC092650.2-201ENST00000619984 902 ntBASIC6.11□□□□□ -1.43
RNF4P78317 LINC01440-210ENST00000629744 541 ntTSL 5 BASIC6.11□□□□□ -1.43
RNF4P78317 AC099654.10-201ENST00000640395 161 ntBASIC6.11□□□□□ -1.43
RNF4P78317 AL139384.2-201ENST00000613809 3590 ntBASIC6.11□□□□□ -1.43
RNF4P78317 CPEB4-202ENST00000334035 6705 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
RNF4P78317 ZNF562-202ENST00000453372 2111 ntAPPRIS P3 TSL 3 BASIC6.11□□□□□ -1.43
RNF4P78317 GVINP1-201ENST00000526769 8438 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
RNF4P78317 RTN4-203ENST00000357376 4110 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
RNF4P78317 SLC2A14-218ENST00000543909 4125 ntAPPRIS P3 TSL 1 (best) BASIC6.11□□□□□ -1.43
RNF4P78317 G6PC-201ENST00000253801 3096 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
RNF4P78317 AC007359.1-202ENST00000419158 2939 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
RNF4P78317 AC008175.1-201ENST00000446299 2939 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
RNF4P78317 OSBPL9-203ENST00000428468 2893 ntAPPRIS P3 TSL 1 (best) BASIC6.11□□□□□ -1.43
RNF4P78317 OR52I2-203ENST00000641896 6591 ntAPPRIS ALT2 BASIC6.11□□□□□ -1.43
RNF4P78317 MATR3-203ENST00000502499 2664 ntTSL 5 BASIC6.11□□□□□ -1.43
RNF4P78317 AIMP1-202ENST00000394701 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC6.11□□□□□ -1.43
RNF4P78317 CLEC6A-201ENST00000382073 1682 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
RNF4P78317 LPAL2-203ENST00000454031 2498 ntBASIC6.1□□□□□ -1.43
RNF4P78317 HSPD1P9-201ENST00000420325 1636 ntBASIC6.1□□□□□ -1.43
RNF4P78317 SORCS1-209ENST00000612154 6862 ntTSL 5 BASIC6.1□□□□□ -1.43
RNF4P78317 CDR1-202ENST00000625883 1485 ntBASIC6.1□□□□□ -1.43
RNF4P78317 EXD1-202ENST00000458580 2177 ntAPPRIS ALT2 TSL 2 BASIC6.1□□□□□ -1.43
RNF4P78317 AC125238.2-201ENST00000430003 1440 ntBASIC6.1□□□□□ -1.43
RNF4P78317 NOVA1-213ENST00000574031 1431 ntTSL 2 BASIC6.1□□□□□ -1.43
RNF4P78317 SCAMP1-206ENST00000618166 1358 ntTSL 2 BASIC6.1□□□□□ -1.43
RNF4P78317 MEPE-203ENST00000424957 2022 ntAPPRIS P3 TSL 2 BASIC6.1□□□□□ -1.43
RNF4P78317 OR5BR1P-201ENST00000524992 1330 ntBASIC6.1□□□□□ -1.43
RNF4P78317 DPH5-201ENST00000342173 1143 ntAPPRIS ALT1 TSL 1 (best) BASIC6.1□□□□□ -1.43
RNF4P78317 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC6.1□□□□□ -1.43
RNF4P78317 PSMD10-206ENST00000372296 878 ntTSL 5 BASIC6.1□□□□□ -1.43
RNF4P78317 RNU6-297P-201ENST00000384636 107 ntBASIC6.1□□□□□ -1.43
RNF4P78317 RNU6-114P-201ENST00000384704 105 ntBASIC6.1□□□□□ -1.43
RNF4P78317 MIR181A1-201ENST00000385026 110 ntBASIC6.1□□□□□ -1.43
RNF4P78317 AC005323.2-201ENST00000399342 583 ntTSL 3 BASIC6.1□□□□□ -1.43
RNF4P78317 VIM2P-201ENST00000402383 1294 ntBASIC6.1□□□□□ -1.43
RNF4P78317 RN7SKP188-201ENST00000410789 317 ntBASIC6.1□□□□□ -1.43
RNF4P78317 HMGN1P14-201ENST00000412459 517 ntBASIC6.1□□□□□ -1.43
RNF4P78317 AC002511.2-201ENST00000413796 450 ntTSL 2 BASIC6.1□□□□□ -1.43
RNF4P78317 AL713922.1-201ENST00000416477 747 ntBASIC6.1□□□□□ -1.43
RNF4P78317 AL035401.1-201ENST00000420572 871 ntTSL 3 BASIC6.1□□□□□ -1.43
RNF4P78317 OFD1P18Y-201ENST00000420889 959 ntBASIC6.1□□□□□ -1.43
RNF4P78317 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC6.1□□□□□ -1.43
RNF4P78317 GLRXP1-201ENST00000423261 334 ntBASIC6.1□□□□□ -1.43
RNF4P78317 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
RNF4P78317 AC233728.2-201ENST00000425348 757 ntBASIC6.1□□□□□ -1.43
RNF4P78317 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC6.1□□□□□ -1.43
RNF4P78317 AC013403.1-201ENST00000436954 263 ntBASIC6.1□□□□□ -1.43
RNF4P78317 AC244505.5-201ENST00000443639 207 ntBASIC6.1□□□□□ -1.43
RNF4P78317 AC017006.2-201ENST00000444077 464 ntTSL 5 BASIC6.1□□□□□ -1.43
RNF4P78317 RPL7P59-201ENST00000447700 943 ntBASIC6.1□□□□□ -1.43
RNF4P78317 Z99127.3-201ENST00000448158 395 ntBASIC6.1□□□□□ -1.43
RNF4P78317 LINC01474-202ENST00000449235 628 ntTSL 3 BASIC6.1□□□□□ -1.43
RNF4P78317 AL935212.3-201ENST00000450729 284 ntBASIC6.1□□□□□ -1.43
RNF4P78317 AC098824.1-201ENST00000453565 980 ntBASIC6.1□□□□□ -1.43
RNF4P78317 AC099670.1-201ENST00000455141 783 ntBASIC6.1□□□□□ -1.43
RNF4P78317 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC6.1□□□□□ -1.43
RNF4P78317 TFEC-208ENST00000484212 1245 ntTSL 2 BASIC6.1□□□□□ -1.43
RNF4P78317 AC041039.1-201ENST00000485656 536 ntBASIC6.1□□□□□ -1.43
RNF4P78317 AC245088.1-201ENST00000486508 384 ntTSL 3 BASIC6.1□□□□□ -1.43
RNF4P78317 RPL24-206ENST00000495401 478 ntTSL 2 BASIC6.1□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 124.3 ms