Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AC015802.3-201ENST00000590241 570 ntTSL 4 BASIC5.77□□□□□ -1.49
COL5A3P25940 LINC02073-202ENST00000592081 535 ntTSL 4 BASIC5.77□□□□□ -1.49
COL5A3P25940 AC245389.1-201ENST00000605141 529 ntBASIC5.77□□□□□ -1.49
COL5A3P25940 AC091979.2-201ENST00000607514 214 ntBASIC5.77□□□□□ -1.49
COL5A3P25940 AC090506.2-201ENST00000624521 419 ntBASIC5.77□□□□□ -1.49
COL5A3P25940 AC006065.6-201ENST00000625201 545 ntBASIC5.77□□□□□ -1.49
COL5A3P25940 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC5.76□□□□□ -1.49
COL5A3P25940 NDUFS1-201ENST00000233190 11819 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
COL5A3P25940 RFX4-201ENST00000229387 3378 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
COL5A3P25940 ANK3-202ENST00000355288 3811 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
COL5A3P25940 PIGN-239ENST00000639902 4439 ntTSL 5 BASIC5.76□□□□□ -1.49
COL5A3P25940 ADAMTS6-203ENST00000381055 7311 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
COL5A3P25940 FAM19A2-215ENST00000551619 2718 ntAPPRIS P1 TSL 2 BASIC5.76□□□□□ -1.49
COL5A3P25940 AC008549.2-201ENST00000333482 706 ntBASIC5.76□□□□□ -1.49
COL5A3P25940 RPL21P65-201ENST00000406094 466 ntBASIC5.76□□□□□ -1.49
COL5A3P25940 AL139095.3-201ENST00000419672 1203 ntBASIC5.76□□□□□ -1.49
COL5A3P25940 ISCUP1-201ENST00000454451 448 ntBASIC5.76□□□□□ -1.49
COL5A3P25940 AP002812.1-201ENST00000495378 474 ntBASIC5.76□□□□□ -1.49
COL5A3P25940 PTPN20-213ENST00000502705 854 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
COL5A3P25940 OR8A2P-201ENST00000528631 952 ntBASIC5.76□□□□□ -1.49
COL5A3P25940 AP001775.2-201ENST00000531710 334 ntTSL 2 BASIC5.76□□□□□ -1.49
COL5A3P25940 AL355096.1-201ENST00000553561 447 ntTSL 3 BASIC5.76□□□□□ -1.49
COL5A3P25940 AC006133.1-201ENST00000617106 264 ntBASIC5.76□□□□□ -1.49
COL5A3P25940 STK31-201ENST00000354639 3596 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
COL5A3P25940 NPIPB9-201ENST00000357796 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC5.76□□□□□ -1.49
COL5A3P25940 AL157938.3-201ENST00000502188 3084 ntTSL 4 BASIC5.76□□□□□ -1.49
COL5A3P25940 RABL3-201ENST00000273375 3883 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
COL5A3P25940 KMT2A-213ENST00000534358 16602 ntAPPRIS ALT2 TSL 1 (best) BASIC5.75□□□□□ -1.49
COL5A3P25940 MYBPC1-201ENST00000361466 3899 ntAPPRIS P4 TSL 1 (best) BASIC5.75□□□□□ -1.49
COL5A3P25940 AL022323.4-201ENST00000623980 13120 ntBASIC5.75□□□□□ -1.49
COL5A3P25940 AMOT-203ENST00000371959 7319 ntAPPRIS ALT2 TSL 1 (best) BASIC5.75□□□□□ -1.49
COL5A3P25940 OR1L4-201ENST00000259466 936 ntAPPRIS P1 BASIC5.75□□□□□ -1.49
COL5A3P25940 RAB9AP4-201ENST00000415230 609 ntBASIC5.75□□□□□ -1.49
COL5A3P25940 AC013429.2-201ENST00000418798 781 ntBASIC5.75□□□□□ -1.49
COL5A3P25940 Z95327.1-201ENST00000446082 482 ntBASIC5.75□□□□□ -1.49
COL5A3P25940 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC5.75□□□□□ -1.49
COL5A3P25940 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC5.75□□□□□ -1.49
COL5A3P25940 AC004704.1-201ENST00000511219 583 ntTSL 3 BASIC5.75□□□□□ -1.49
COL5A3P25940 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC5.75□□□□□ -1.49
COL5A3P25940 LINC02290-201ENST00000554187 608 ntTSL 4 BASIC5.75□□□□□ -1.49
COL5A3P25940 AC015660.2-201ENST00000561362 323 ntTSL 3 BASIC5.75□□□□□ -1.49
COL5A3P25940 LINC00347-205ENST00000597518 868 ntTSL 5 BASIC5.75□□□□□ -1.49
COL5A3P25940 AL354984.3-201ENST00000604803 325 ntBASIC5.75□□□□□ -1.49
COL5A3P25940 IGKV2OR2-2-201ENST00000605025 300 ntBASIC5.75□□□□□ -1.49
COL5A3P25940 LINC02112-204ENST00000606222 429 ntTSL 5 BASIC5.75□□□□□ -1.49
COL5A3P25940 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC5.75□□□□□ -1.49
COL5A3P25940 AC034229.5-201ENST00000624258 185 ntBASIC5.75□□□□□ -1.49
COL5A3P25940 AL445487.1-201ENST00000415694 1580 ntBASIC5.75□□□□□ -1.49
COL5A3P25940 TRPC4-205ENST00000379679 2475 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
COL5A3P25940 KCNJ16-202ENST00000392670 4009 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
COL5A3P25940 KCNJ16-204ENST00000585558 4014 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
COL5A3P25940 RBMX-203ENST00000431446 2004 ntTSL 2 BASIC5.75□□□□□ -1.49
COL5A3P25940 SKIL-201ENST00000259119 3057 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
COL5A3P25940 RAPGEF6-208ENST00000509018 8357 ntAPPRIS P3 TSL 1 (best) BASIC5.74□□□□□ -1.49
COL5A3P25940 PCDH15-213ENST00000395445 5917 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
COL5A3P25940 AL591135.1-201ENST00000401578 5914 ntBASIC5.74□□□□□ -1.49
COL5A3P25940 RN7SKP224-201ENST00000364140 325 ntBASIC5.74□□□□□ -1.49
COL5A3P25940 UBBP2-201ENST00000376781 231 ntBASIC5.74□□□□□ -1.49
COL5A3P25940 AL161909.1-201ENST00000397390 712 ntBASIC5.74□□□□□ -1.49
COL5A3P25940 Z98745.1-201ENST00000402553 494 ntBASIC5.74□□□□□ -1.49
COL5A3P25940 RN7SKP33-201ENST00000410942 340 ntBASIC5.74□□□□□ -1.49
COL5A3P25940 Z74021.1-201ENST00000423610 407 ntBASIC5.74□□□□□ -1.49
COL5A3P25940 AL136099.1-201ENST00000436492 557 ntTSL 3 BASIC5.74□□□□□ -1.49
COL5A3P25940 RPL21P89-201ENST00000444021 467 ntBASIC5.74□□□□□ -1.49
COL5A3P25940 RHEBP2-201ENST00000450289 600 ntBASIC5.74□□□□□ -1.49
COL5A3P25940 AL935212.3-201ENST00000450729 284 ntBASIC5.74□□□□□ -1.49
COL5A3P25940 RN7SL542P-201ENST00000467147 294 ntBASIC5.74□□□□□ -1.49
COL5A3P25940 AC022034.3-201ENST00000471393 478 ntBASIC5.74□□□□□ -1.49
COL5A3P25940 NDUFB2-213ENST00000476470 482 ntTSL 5 BASIC5.74□□□□□ -1.49
COL5A3P25940 AC008958.1-201ENST00000511047 682 ntBASIC5.74□□□□□ -1.49
COL5A3P25940 AC110760.1-201ENST00000513770 590 ntTSL 3 BASIC5.74□□□□□ -1.49
COL5A3P25940 AC010476.1-201ENST00000519111 851 ntBASIC5.74□□□□□ -1.49
COL5A3P25940 AC136424.2-201ENST00000522582 563 ntTSL 4 BASIC5.74□□□□□ -1.49
COL5A3P25940 AC004160.1-202ENST00000599917 578 ntTSL 5 BASIC5.74□□□□□ -1.49
COL5A3P25940 AL356056.1-205ENST00000608904 651 ntTSL 5 BASIC5.74□□□□□ -1.49
COL5A3P25940 AC015914.2-201ENST00000618167 288 ntBASIC5.74□□□□□ -1.49
COL5A3P25940 AL139254.3-201ENST00000641097 674 ntBASIC5.74□□□□□ -1.49
COL5A3P25940 DICER1-202ENST00000393063 10220 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
COL5A3P25940 ANK3-216ENST00000503366 5792 ntAPPRIS ALT2 TSL 2 BASIC5.74□□□□□ -1.49
COL5A3P25940 MKKS-202ENST00000399054 2663 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
COL5A3P25940 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
COL5A3P25940 TOR1AIP2-201ENST00000367612 7905 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
COL5A3P25940 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC5.74□□□□□ -1.49
COL5A3P25940 NFATC3-201ENST00000329524 6144 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
COL5A3P25940 DGKB-203ENST00000403951 6917 ntAPPRIS P2 TSL 5 BASIC5.74□□□□□ -1.49
COL5A3P25940 UBXN7-201ENST00000296328 10568 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
COL5A3P25940 PTPRD-205ENST00000397611 8242 ntTSL 5 BASIC5.74□□□□□ -1.49
COL5A3P25940 AC092828.1-201ENST00000501211 5391 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
COL5A3P25940 IRAK1BP1-204ENST00000607739 1387 ntTSL 2 BASIC5.74□□□□□ -1.49
COL5A3P25940 WDR64-201ENST00000366552 4371 ntAPPRIS P1 TSL 5 BASIC5.74□□□□□ -1.49
COL5A3P25940 ZNF638-203ENST00000409544 6821 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
COL5A3P25940 RNU1-85P-201ENST00000364127 164 ntBASIC5.74□□□□□ -1.49
COL5A3P25940 PMS1-202ENST00000374826 948 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
COL5A3P25940 AL359837.1-201ENST00000381357 287 ntBASIC5.74□□□□□ -1.49
COL5A3P25940 RNA5SP171-201ENST00000391071 115 ntBASIC5.74□□□□□ -1.49
COL5A3P25940 HYKK-202ENST00000408962 847 ntTSL 5 BASIC5.74□□□□□ -1.49
COL5A3P25940 AC079809.1-201ENST00000415468 276 ntBASIC5.74□□□□□ -1.49
COL5A3P25940 AC073525.1-201ENST00000549762 543 ntTSL 3 BASIC5.74□□□□□ -1.49
COL5A3P25940 HYKK-203ENST00000563233 734 ntTSL 2 BASIC5.74□□□□□ -1.49
COL5A3P25940 MIR4286-201ENST00000580651 93 ntBASIC5.74□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 91.5 ms