Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 PTBP1P-201ENST00000554374 1601 ntBASIC18.84■□□□□ 0.61
VPS4AQ9UN37 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC18.84■□□□□ 0.61
VPS4AQ9UN37 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
VPS4AQ9UN37 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
VPS4AQ9UN37 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
VPS4AQ9UN37 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
VPS4AQ9UN37 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
VPS4AQ9UN37 KRT8P17-201ENST00000453110 1448 ntBASIC18.83■□□□□ 0.61
VPS4AQ9UN37 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC18.83■□□□□ 0.61
VPS4AQ9UN37 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
VPS4AQ9UN37 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.61
VPS4AQ9UN37 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC18.83■□□□□ 0.61
VPS4AQ9UN37 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VPS4AQ9UN37 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
VPS4AQ9UN37 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VPS4AQ9UN37 BX088651.1-201ENST00000540551 451 ntBASIC18.83■□□□□ 0.6
VPS4AQ9UN37 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
VPS4AQ9UN37 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
VPS4AQ9UN37 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
VPS4AQ9UN37 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC18.83■□□□□ 0.6
VPS4AQ9UN37 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC18.83■□□□□ 0.6
VPS4AQ9UN37 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VPS4AQ9UN37 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VPS4AQ9UN37 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC18.83■□□□□ 0.6
VPS4AQ9UN37 KRT16P6-202ENST00000425692 1426 ntBASIC18.83■□□□□ 0.6
VPS4AQ9UN37 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS4AQ9UN37 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS4AQ9UN37 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VPS4AQ9UN37 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VPS4AQ9UN37 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VPS4AQ9UN37 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
VPS4AQ9UN37 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS4AQ9UN37 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS4AQ9UN37 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC18.82■□□□□ 0.6
VPS4AQ9UN37 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
VPS4AQ9UN37 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC18.82■□□□□ 0.6
VPS4AQ9UN37 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VPS4AQ9UN37 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS4AQ9UN37 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS4AQ9UN37 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS4AQ9UN37 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC18.82■□□□□ 0.6
VPS4AQ9UN37 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC18.82■□□□□ 0.6
VPS4AQ9UN37 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VPS4AQ9UN37 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS4AQ9UN37 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS4AQ9UN37 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC18.82■□□□□ 0.6
VPS4AQ9UN37 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC18.82■□□□□ 0.6
VPS4AQ9UN37 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC18.81■□□□□ 0.6
VPS4AQ9UN37 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS4AQ9UN37 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VPS4AQ9UN37 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
VPS4AQ9UN37 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
VPS4AQ9UN37 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VPS4AQ9UN37 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VPS4AQ9UN37 MDFI-202ENST00000373050 809 ntTSL 2 BASIC18.81■□□□□ 0.6
VPS4AQ9UN37 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC18.81■□□□□ 0.6
VPS4AQ9UN37 OR2A1-AS1-207ENST00000486094 819 ntBASIC18.81■□□□□ 0.6
VPS4AQ9UN37 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS4AQ9UN37 AL031963.3-201ENST00000606441 850 ntBASIC18.81■□□□□ 0.6
VPS4AQ9UN37 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VPS4AQ9UN37 AC105020.6-201ENST00000621523 1217 ntBASIC18.81■□□□□ 0.6
VPS4AQ9UN37 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
VPS4AQ9UN37 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VPS4AQ9UN37 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VPS4AQ9UN37 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC18.81■□□□□ 0.6
VPS4AQ9UN37 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VPS4AQ9UN37 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS4AQ9UN37 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC18.81■□□□□ 0.6
VPS4AQ9UN37 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS4AQ9UN37 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
VPS4AQ9UN37 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS4AQ9UN37 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC18.8■□□□□ 0.6
VPS4AQ9UN37 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC18.8■□□□□ 0.6
VPS4AQ9UN37 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC18.8■□□□□ 0.6
VPS4AQ9UN37 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
VPS4AQ9UN37 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS4AQ9UN37 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS4AQ9UN37 KRT18P68-201ENST00000392293 1000 ntBASIC18.8■□□□□ 0.6
VPS4AQ9UN37 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
VPS4AQ9UN37 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC18.8■□□□□ 0.6
VPS4AQ9UN37 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
VPS4AQ9UN37 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
VPS4AQ9UN37 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC18.8■□□□□ 0.6
VPS4AQ9UN37 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC18.8■□□□□ 0.6
VPS4AQ9UN37 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC18.8■□□□□ 0.6
VPS4AQ9UN37 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC18.8■□□□□ 0.6
VPS4AQ9UN37 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS4AQ9UN37 KRT8P20-201ENST00000423953 1409 ntBASIC18.8■□□□□ 0.6
VPS4AQ9UN37 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS4AQ9UN37 AC009237.14-201ENST00000609975 1594 ntBASIC18.8■□□□□ 0.6
VPS4AQ9UN37 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
VPS4AQ9UN37 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC18.8■□□□□ 0.6
VPS4AQ9UN37 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS4AQ9UN37 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC18.79■□□□□ 0.6
VPS4AQ9UN37 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC18.79■□□□□ 0.6
VPS4AQ9UN37 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
VPS4AQ9UN37 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
VPS4AQ9UN37 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS4AQ9UN37 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS4AQ9UN37 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms