Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC17.36■□□□□ 0.37
CLCF1Q9UBD9 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
CLCF1Q9UBD9 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CLCF1Q9UBD9 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC17.35■□□□□ 0.37
CLCF1Q9UBD9 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CLCF1Q9UBD9 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
CLCF1Q9UBD9 LINC01006-201ENST00000333319 2292 ntBASIC17.35■□□□□ 0.37
CLCF1Q9UBD9 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CLCF1Q9UBD9 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CLCF1Q9UBD9 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CLCF1Q9UBD9 MIR1238-201ENST00000408483 83 ntBASIC17.35■□□□□ 0.37
CLCF1Q9UBD9 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
CLCF1Q9UBD9 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC17.35■□□□□ 0.37
CLCF1Q9UBD9 AC011506.1-201ENST00000474329 610 ntBASIC17.35■□□□□ 0.37
CLCF1Q9UBD9 FITM1-202ENST00000559294 800 ntBASIC17.35■□□□□ 0.37
CLCF1Q9UBD9 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC17.35■□□□□ 0.37
CLCF1Q9UBD9 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC17.35■□□□□ 0.37
CLCF1Q9UBD9 DGCR10-201ENST00000609839 495 ntBASIC17.35■□□□□ 0.37
CLCF1Q9UBD9 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC17.35■□□□□ 0.37
CLCF1Q9UBD9 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CLCF1Q9UBD9 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CLCF1Q9UBD9 USP48-205ENST00000421625 2818 ntTSL 2 BASIC17.35■□□□□ 0.37
CLCF1Q9UBD9 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
CLCF1Q9UBD9 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC17.35■□□□□ 0.37
CLCF1Q9UBD9 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CLCF1Q9UBD9 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
CLCF1Q9UBD9 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC17.35■□□□□ 0.37
CLCF1Q9UBD9 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC17.35■□□□□ 0.37
CLCF1Q9UBD9 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC17.35■□□□□ 0.37
CLCF1Q9UBD9 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC17.34■□□□□ 0.37
CLCF1Q9UBD9 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CLCF1Q9UBD9 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
CLCF1Q9UBD9 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CLCF1Q9UBD9 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CLCF1Q9UBD9 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
CLCF1Q9UBD9 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC17.34■□□□□ 0.37
CLCF1Q9UBD9 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CLCF1Q9UBD9 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CLCF1Q9UBD9 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
CLCF1Q9UBD9 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
CLCF1Q9UBD9 AL390955.1-201ENST00000428694 934 ntBASIC17.34■□□□□ 0.37
CLCF1Q9UBD9 PTPA-216ENST00000432651 857 ntTSL 2 BASIC17.34■□□□□ 0.37
CLCF1Q9UBD9 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC17.34■□□□□ 0.37
CLCF1Q9UBD9 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC17.34■□□□□ 0.37
CLCF1Q9UBD9 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC17.34■□□□□ 0.37
CLCF1Q9UBD9 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC17.34■□□□□ 0.37
CLCF1Q9UBD9 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
CLCF1Q9UBD9 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
CLCF1Q9UBD9 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC17.34■□□□□ 0.37
CLCF1Q9UBD9 KRT8P9-201ENST00000558927 1449 ntBASIC17.34■□□□□ 0.37
CLCF1Q9UBD9 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CLCF1Q9UBD9 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC17.34■□□□□ 0.37
CLCF1Q9UBD9 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC17.34■□□□□ 0.37
CLCF1Q9UBD9 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC17.34■□□□□ 0.37
CLCF1Q9UBD9 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
CLCF1Q9UBD9 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
CLCF1Q9UBD9 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
CLCF1Q9UBD9 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC17.33■□□□□ 0.37
CLCF1Q9UBD9 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CLCF1Q9UBD9 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CLCF1Q9UBD9 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CLCF1Q9UBD9 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CLCF1Q9UBD9 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CLCF1Q9UBD9 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
CLCF1Q9UBD9 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC17.33■□□□□ 0.36
CLCF1Q9UBD9 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CLCF1Q9UBD9 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
CLCF1Q9UBD9 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CLCF1Q9UBD9 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC17.33■□□□□ 0.36
CLCF1Q9UBD9 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC17.33■□□□□ 0.36
CLCF1Q9UBD9 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
CLCF1Q9UBD9 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CLCF1Q9UBD9 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC17.33■□□□□ 0.36
CLCF1Q9UBD9 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
CLCF1Q9UBD9 USP39-204ENST00000409766 2033 ntTSL 2 BASIC17.33■□□□□ 0.36
CLCF1Q9UBD9 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
CLCF1Q9UBD9 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CLCF1Q9UBD9 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
CLCF1Q9UBD9 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CLCF1Q9UBD9 AL157384.1-201ENST00000445995 2473 ntBASIC17.32■□□□□ 0.36
CLCF1Q9UBD9 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
CLCF1Q9UBD9 RCC2P6-201ENST00000526625 1557 ntBASIC17.32■□□□□ 0.36
CLCF1Q9UBD9 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC17.32■□□□□ 0.36
CLCF1Q9UBD9 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLCF1Q9UBD9 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLCF1Q9UBD9 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC17.32■□□□□ 0.36
CLCF1Q9UBD9 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLCF1Q9UBD9 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLCF1Q9UBD9 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
CLCF1Q9UBD9 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLCF1Q9UBD9 TCF3P1-201ENST00000423021 1937 ntBASIC17.32■□□□□ 0.36
CLCF1Q9UBD9 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
CLCF1Q9UBD9 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLCF1Q9UBD9 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC17.32■□□□□ 0.36
CLCF1Q9UBD9 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC17.32■□□□□ 0.36
CLCF1Q9UBD9 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC17.32■□□□□ 0.36
CLCF1Q9UBD9 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CLCF1Q9UBD9 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CLCF1Q9UBD9 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
CLCF1Q9UBD9 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms